PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G01880.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 362aa    MW: 38441.2 Da    PI: 7.992
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G01880.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H222.53e-07197219123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C+ Cgk F+r  nL+ H+r H
  OGLUM04G01880.1 197 HYCQVCGKGFKRDANLRMHMRAH 219
                      68*******************99 PP
2zf-C2H212.90.00032281304123
                      EEETTTT.EEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCg.ksFsrksnLkrHirtH 23 
                      y+C+ Cg k F   s+L++H + +
  OGLUM04G01880.1 281 YVCGRCGgKQFAVLSDLRTHEKHC 304
                      9*******************9876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000180174186IPR018247EF-Hand 1, calcium-binding site
SuperFamilySSF576674.68E-6196223No hitNo description
SMARTSM003550.0034197219IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.602.6E-6197221IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.653197224IPR007087Zinc finger, C2H2
PROSITE patternPS000280199219IPR007087Zinc finger, C2H2
SMARTSM00355110243276IPR015880Zinc finger, C2H2-like
SMARTSM0035530281303IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MNPQEFQFFQ GVEQEMLLLS HGGGGAAAPA PAAASDDVLA YHVSVLRDKV QQLEPLVGMV  60
VSPAAAHGHL RRDAAAMAAS SACSVLQEIT AAASAVAHRL EQASAASSSF RRRVAFADDA  120
HAGGEQMFAA GAHGGGEGGG DEADASLFHH QPTVFRAGAT TTVAASSSGR GGGDDDGDGE  180
VDVVELEASY LLARYTHYCQ VCGKGFKRDA NLRMHMRAHG DEYKTAAALT STAMKATARR  240
CSYSCPAEGC RWNRRHPRFQ ALKSVVCAKN HYRRSHCPKM YVCGRCGGKQ FAVLSDLRTH  300
EKHCGELRWL CSCGTFFSRK DKLMGHVALF ATAGHAPVPV APEASPSTTT TGTTTERSRD  360
CL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL4421130.0AL442113.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0806H05, complete sequence.
GenBankCP0126120.0CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBankCT8379280.0CT837928.2 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA123A12, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635006.11e-180protein SENSITIVE TO PROTON RHIZOTOXICITY 2
TrEMBLA0A0D9ZGW90.0A0A0D9ZGW9_9ORYZ; Uncharacterized protein
STRINGOGLUM04G01880.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74413251
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22890.11e-75C2H2 family protein