PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G06590.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 289aa    MW: 30704.3 Da    PI: 7.0465
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G06590.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH413.4e-1398143555
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      + ++Er RR+r+N++++ Lr ++Pk      +K++Ka+i++ A+ +I +Lq
  OGLUM04G06590.1  98 NIAMERDRRKRLNEKLFALRAVVPKI-----TKMDKASIVRDAIAHIEKLQ 143
                      6789*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.19393142IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-1597161IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.03E-1397147No hitNo description
PfamPF000106.8E-1198143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.6E-1499148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-14100160IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MEAAADMGVL LDLYWHTPHI FDLAVADSLL MDGFGGGMYV PAPAPATPAM VEKEYDESLS  60
ELYAYTSQSR YANSSSPDVV NSCSTAAVSA AAAASSKNIA MERDRRKRLN EKLFALRAVV  120
PKITKMDKAS IVRDAIAHIE KLQEEERQLL DEISVLQSTA AAAAAATTVV KDDNGGVAMP  180
RMKKLRSTPP LDGGGGALRV TSSPSLQILE LQASKVGEKT VAVSIRCAKT RGAMAKVCHA  240
VESLRLKVVS ASVAAVDGTI VHTMLVETEQ MSGAQEMKQR IQSSLLSAP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL7316211e-142AL731621.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0013O03, complete sequence.
GenBankAP0149601e-142AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015633867.11e-171transcription factor bHLH35
TrEMBLA0A0D9ZIL60.0A0A0D9ZIL6_9ORYZ; Uncharacterized protein
STRINGOGLUM04G06590.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.13e-39bHLH family protein