PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G06620.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 293aa    MW: 31023.8 Da    PI: 4.9279
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G06620.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH26.51.1e-0895133649
                      HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHH CS
              HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAve 49 
                        +Er RR+++N+++  Lr+++P+      +K++Ka+i + A++
  OGLUM04G06620.1  95 ILMERDRRRKLNEKLYALRSVVPNI-----TKMDKASIIKDAID 133
                      579*********************7.....7***********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.6289138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-1192133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.05E-893133No hitNo description
PfamPF000101.9E-694133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003530.002795134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-995133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550218.24E-5214273No hitNo description
CDDcd048730.00121215281No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MDAEMAMGES FAYYWETQRY LESEELDSMY LPTQDDSNYE SSSPDGSHSS SAPAPAAVGG  60
DAAAAVAGSG GGMMTMMMGG GGGGGDDAGG ANKNILMERD RRRKLNEKLY ALRSVVPNIT  120
KMDKASIIKD AIDPPPRRAP PXAAANPFAG LGADEEYEYG HHPSSSAAAA AERTKKVKRA  180
LSVSSINDAL LAAAAPAPPV EIQELRVSEV GDRVLVVSVT CSKRRDAMAR VCRALEDLRL  240
RVITANITSV AGCLMHTLFV EVDHMDSVQM KQMVEAALSQ LVATGSPLSS MSY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2422100.0AK242210.1 Oryza sativa Japonica Group cDNA, clone: J075170K16, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634154.11e-135transcription factor bHLH35
TrEMBLA0A0D9ZIM30.0A0A0D9ZIM3_9ORYZ; Uncharacterized protein
STRINGOGLUM04G06620.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP104438133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.13e-38bHLH family protein