PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G08150.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family B3
Protein Properties Length: 146aa    MW: 15005.1 Da    PI: 8.7752
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G08150.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3451.9e-1422121399
                      EE-..-HHHHTT-EE--HHH.HTT.........---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-S CS
               B3   3 kvltpsdvlksgrlvlpkkfaeeh.........ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldg 86 
                      kvl+ps+ +k +   ++ + a++          gg     +  ++ ++ g+ W+v++  ++ +++  +l++GW eF+ a+gL +g fvv +++g
  OGLUM04G08150.1  22 KVLMPSSFHKMH---ISDELAAHLlgergdgggGGA--ARRAARVVSPVGKIWDVEVGRDGDGDGgAFLGRGWAEFAAAHGLGVGWFVVVRHEG 110
                      777777777655...888888555999999974333..44589**************6644444479************************755 PP

                      SSEE..EEEEE-S CS
               B3  87 rsefelvvkvfrk 99 
                        ++ l+vk+f++
  OGLUM04G08150.1 111 --GGVLTVKLFDT 121
                      ..7778***9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM010191.6E-520122IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-1420124IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.14E-1521125IPR015300DNA-binding pseudobarrel domain
PfamPF023625.0E-1122121IPR003340B3 DNA binding domain
CDDcd100178.97E-1022120No hitNo description
PROSITE profilePS508639.95366122IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MPGDHAGAGA AVGAAAKAMQ LKVLMPSSFH KMHISDELAA HLLGERGDGG GGGAARRAAR  60
VVSPVGKIWD VEVGRDGDGD GGAFLGRGWA EFAAAHGLGV GWFVVVRHEG GGVLTVKLFD  120
TTCCLKDFAA PPAGNRSKDY LHAKFK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6629631e-133AL662963.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0020I02, complete sequence.
GenBankAP0149601e-133AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002447504.22e-43putative B3 domain-containing protein Os04g0346900
SwissprotQ7XS743e-47Y4474_ORYSJ; Putative B3 domain-containing protein Os04g0347400
TrEMBLA0A0D9ZJ792e-98A0A0D9ZJ79_9ORYZ; Uncharacterized protein
STRINGOGLUM04G08150.13e-99(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP42535187