PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G08780.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 209aa    MW: 23657.5 Da    PI: 10.1186
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G08780.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF21.33.5e-071438630
                     HHHHHHHHHHHHHHHHHHHHHHHHH CS
           SRF-TF  6 ksnrqvtfskRrngilKKAeELSvL 30
                     + +r vtf kR++g+ KK +E  +L
  OGLUM04G08780.1 14 DVKRRVTFMKRLKGLTKKVSEFATL 38
                     679******************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554551.11E-14181IPR002100Transcription factor, MADS-box
PROSITE profilePS5006611.493138IPR002100Transcription factor, MADS-box
SMARTSM004320.003156IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-5323IPR002100Transcription factor, MADS-box
PfamPF003193.0E-71438IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-52338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MAHKKVKLQR IIIDVKRRVT FMKRLKGLTK KVSEFATLFL MVYGEVEVQA TMVWPSVWEA  60
TRVLEHFNAM PHLDRYKKMT DLERILNEQV DKLKEQLHKV GHDANESETK LLLIEAINGR  120
RPSLEGLTIE QITSLGWMAN AHLKIVNDRL KKLHEEGLIP ASVSLSGTEV PTQREGWLMD  180
VARGIGSMGY NRFRGSSGSG TAGYNGDMA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6629860.0AL662986.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0087H01, complete sequence.
GenBankAL6630070.0AL663007.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0054B09, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCR8550820.0CR855082.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0139J17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015634782.11e-133agamous-like MADS-box protein AGL80
TrEMBLA0A0D9ZJG81e-152A0A0D9ZJG8_9ORYZ; Uncharacterized protein
STRINGOGLUM04G08780.11e-153(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.19e-17AGAMOUS-like 80