PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G09140.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ZF-HD
Protein Properties Length: 188aa    MW: 20817 Da    PI: 10.0339
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G09140.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer77.12.4e-241056457
      ZF-HD_dimer  4 vrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrev 57
                      +Y++C++NhAa+lG++a DGC+E++p+       ++l CaACgCHRnFHR++ 
  OGLUM04G09140.1 10 EVYRKCMRNHAAKLGTYANDGCCEYTPN-------DGLLCAACGCHRNFHRKDF 56
                     68*************************8.......79***************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.0E-181155IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015661.8E-171255IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-171255IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152317.7711255IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.607.3E-8118153IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 188 aa     Download sequence    Send to blast
MEQQQERPQE VYRKCMRNHA AKLGTYANDG CCEYTPNDGL LCAACGCHRN FHRKDFLDGR  60
ATAATVSAGV PGRLRMHQCC RPPVEAGCRD TCTWRRWVAE SLTAAAGTAR LRREAADAQT  120
KFTKEQKARM LRFAERLGWR IAGARQRTQG RRCGAFLLPP APAATSILLP PPPLPPDLAD  180
GRALMPGR
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015630147.19e-41zinc-finger homeodomain protein 11
SwissprotA2XLF48e-42ZHD11_ORYSI; Zinc-finger homeodomain protein 11
SwissprotQ10DV58e-42ZHD11_ORYSJ; Zinc-finger homeodomain protein 11
TrEMBLA0A0D9ZJL71e-134A0A0D9ZJL7_9ORYZ; Uncharacterized protein
STRINGOGLUM04G09140.11e-135(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92043243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.12e-22homeobox protein 22