PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G09460.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 807aa    MW: 89956.4 Da    PI: 9.5397
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G09460.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.6e-07619660240
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqc 40 
                      ++W  eE ell +a++++++g   +W+ +++ +g+gR+ +++
  OGLUM04G09460.1 619 KPWGREEIELLRKAIQKYPKGtsrRWEVVSEFIGTGRSVEEI 660
                      68***********************************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465653.27E-20223322IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1105.4E-20240334IPR001623DnaJ domain
SMARTSM002712.6E-15243318IPR001623DnaJ domain
PROSITE profilePS5007618.045244326IPR001623DnaJ domain
PfamPF002261.5E-17244323IPR001623DnaJ domain
CDDcd062572.46E-13244315IPR001623DnaJ domain
PRINTSPR006254.7E-8249267IPR001623DnaJ domain
PRINTSPR006254.7E-8267282IPR001623DnaJ domain
PRINTSPR006254.7E-8298318IPR001623DnaJ domain
PROSITE patternPS006360303322IPR018253DnaJ domain, conserved site
PROSITE profilePS500905.959613668IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.602.9E-4614660IPR009057Homeodomain-like
SMARTSM007171.4E-5617670IPR001005SANT/Myb domain
SuperFamilySSF466898.97E-7619662IPR009057Homeodomain-like
PfamPF002494.4E-6619660IPR001005SANT/Myb domain
CDDcd001675.34E-5620660No hitNo description
SMARTSM007173.3E-6747799IPR001005SANT/Myb domain
SuperFamilySSF466891.57E-7748796IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.7E-4750792IPR009057Homeodomain-like
CDDcd001672.49E-5750792No hitNo description
PROSITE profilePS500906.098751792IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 807 aa     Download sequence    Send to blast
MYRLSSPPAR VVAKPNTAEE PHHPRSPKMP PAQIPRGISP LSSPTLAAPK LPTPPRHLLL  60
LPSAGGAHPR LPLPSPLPLP RDSWTAGDPS PPHHLTRRAT TSRAGARRLD DEQDEQAGGR  120
RQPANQAAGR EILGEEEQLL LFDRGRSPLI PSARIDQAIS VQEIIDGAPL YVSSNCLPIK  180
ACKYEPAGHS FHAAALKLLG LGEQEDTETD DRSVSSDDKS QDFSAASDTF SSKGKKKSGS  240
QQQDHYALLG LGHLRFLATE DQIRKSYRDM ALKHHPDKQA SLILAEATEE AKQAKKDEIE  300
SHFKAIQEAY EVLIDPTKRR IFDSTDEFDD DIPTDCAPQD FYKVFGPAFM RNGRWSVNQT  360
IPSLGDDATP VEEVDKFYNF WYNFKSWREF PHADEYDLEQ AESREHKRWM ERQNAKLQEK  420
AKKVEYARVR TLVDNAYKKD PRIQRRKEEE KAEKQRRKEA KYLAKKMQEE EAAKAAEEER  480
KRKEEEAKRA AEAALNQKKL KEKEKKLLRK EKTRLRNLVA PVVAESHFSL SEDDVETACS  540
SLDMERLKKL CDSMENKDTT EKARLLRGAL SKEGSSGTSN EGKKIQANGV DGSKAKSTSS  600
GEKVTQGNTL SNYEKKEEKP WGREEIELLR KAIQKYPKGT SRRWEVVSEF IGTGRSVEEI  660
LKATKTVLLQ KPDSTKAFDS FLEKRKPAPS IASPLSVRTE TVGLPTEKAS GDASSKAPAQ  720
PASSKTSDEK APAPAPVSNG TPSGTADPEA WSEAQVLALV QALKAFPKDA SQRWERVAAA  780
VPGKTMVQCK KKVAEMQKNF RSKKGAE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A3e-1934044420124Zuotin
5dje_B3e-1934044420124Zuotin
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1479500RKRKEEEAKRAAEAALNQKKLK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR8550890.0CR855089.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0135C09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006652199.10.0PREDICTED: dnaJ homolog subfamily C member 2
TrEMBLA0A0D9ZJQ90.0A0A0D9ZJQ9_9ORYZ; Uncharacterized protein
STRINGOGLUM04G09460.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81193440
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.10.0DnaJ domain ;Myb-like DNA-binding domain