PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G10090.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 70aa    MW: 7905.23 Da    PI: 10.1329
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G10090.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF50.62.4e-161161250
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE..-TTSEEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviif..sstgklyeys 50
                     rie+  +r + f kR++g+ KKAeEL vLCda v  +++  s +++l+ ++
  OGLUM04G10090.1 11 RIEDRVRRGICFRKRLAGLEKKAEELAVLCDAHVGFVVLscSDDDRLHHFA 61
                     8*********************************87776226788888886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006618.082250IPR002100Transcription factor, MADS-box
SMARTSM004323.7E-13263IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.57E-16363IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-11424IPR002100Transcription factor, MADS-box
PfamPF003195.4E-191160IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-112439IPR002100Transcription factor, MADS-box
PRINTSPR004041.5E-113960IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 70 aa     Download sequence    Send to blast
MGRRGRVVLR RIEDRVRRGI CFRKRLAGLE KKAEELAVLC DAHVGFVVLS CSDDDRLHHF  60
AAPATYALSP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR8550971e-113CR855097.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0075F02, complete sequence.
GenBankCR8551151e-113CR855115.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0148P16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637115.16e-26truncated transcription factor CAULIFLOWER D-like isoform X1
RefseqXP_025880634.12e-26MADS-box transcription factor 33-like isoform X3
RefseqXP_025880635.13e-26MADS-box transcription factor 33-like isoform X4
TrEMBLA0A0D3FV423e-42A0A0D3FV42_9ORYZ; Uncharacterized protein
TrEMBLA0A0D9ZJY93e-42A0A0D9ZJY9_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0GZW13e-42A0A0E0GZW1_ORYNI; Uncharacterized protein
TrEMBLI1P6223e-42I1P622_ORYGL; Uncharacterized protein
STRINGOGLUM04G10090.15e-43(Oryza glumipatula)
STRINGONIVA04G08280.15e-43(Oryza nivara)
STRINGORGLA02G0342800.15e-43(Oryza glaberrima)
STRINGOBART04G10400.15e-43(Oryza barthii)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP154931117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37940.14e-14AGAMOUS-like 21