PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G10170.2
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family CAMTA
Protein Properties Length: 988aa    MW: 110542 Da    PI: 6.2529
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G10170.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-11772.4e-55111272117
             CG-1   2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptf 94 
                      +ke ++rwlk++e++ iL+n+e++ +t e++++p+sgsl+Lynr++ ryfr+DG+ w++kkdg+tv E+he+LKvg+v++l+cyYah+e+np f
  OGLUM04G10170.2  11 HKEaRSRWLKPSEVYYILQNHERFPITPEPPKKPPSGSLFLYNRRVNRYFRRDGHAWRRKKDGRTVGEAHERLKVGNVDALSCYYAHGEQNPCF 104
                      67779***************************************************************************************** PP

             CG-1  95 qrrcywlLeeelekivlvhylev 117
                      qrrc+w+Le ++e+ivlv+y+ev
  OGLUM04G10170.2 105 QRRCFWMLEPAYEHIVLVQYREV 127
                      *********************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143780.3497133IPR005559CG-1 DNA-binding domain
SMARTSM010763.0E-7010128IPR005559CG-1 DNA-binding domain
PfamPF038597.3E-4713126IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.107.9E-6435523IPR013783Immunoglobulin-like fold
SuperFamilySSF812965.42E-16436518IPR014756Immunoglobulin E-set
PfamPF018333.6E-7436517IPR002909IPT domain
SuperFamilySSF484031.04E-15467511IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.4E-15631727IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.04E-15631728IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.212633725IPR020683Ankyrin repeat-containing domain
CDDcd002046.32E-9638725No hitNo description
PfamPF127961.1E-7649727IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008810.927666698IPR002110Ankyrin repeat
SMARTSM002482.4E-4666695IPR002110Ankyrin repeat
SMARTSM002481800705734IPR002110Ankyrin repeat
SMARTSM0001527786808IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500967.529787816IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525401.35E-6842892IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.95845874IPR000048IQ motif, EF-hand binding site
SMARTSM0001519846866IPR000048IQ motif, EF-hand binding site
PfamPF006120.022847865IPR000048IQ motif, EF-hand binding site
SMARTSM000151.7E-6867889IPR000048IQ motif, EF-hand binding site
PROSITE profilePS5009610.64868896IPR000048IQ motif, EF-hand binding site
PfamPF006121.4E-5869889IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 988 aa     Download sequence    Send to blast
MSLSFDINVL HKEARSRWLK PSEVYYILQN HERFPITPEP PKKPPSGSLF LYNRRVNRYF  60
RRDGHAWRRK KDGRTVGEAH ERLKVGNVDA LSCYYAHGEQ NPCFQRRCFW MLEPAYEHIV  120
LVQYREVGAA EGRYNSASLL NGPTDSLSVL SYPNATYGNQ YLGSTSGVSD GSESRHSNLS  180
SVTEVSSYSA NKDNGILQSI QELSQSTIMG APALGQSSLE QSIEVRRVDN SNSTNKSGLN  240
RALKQIVEQL SLGDDEDDDY IHQAQPFDFI TNIEAPDRQR DASRNVSGGS QAKQIRAEEM  300
QNGLGRGIPS SWEDSTPHYP QNSEYQPPGS LYNSDMQQIS AAKRFLLETE DSIDSPSYNY  360
VPREEGNNGT NTLSVHDYSL QSSLNPDWKK TAPLTLQSNL YGSEIPSLLL DHGQFESLSS  420
GENTRLILGQ NPRFSIREVS PEWTYCYEIT KVIITGDFLC DPSSSCWAVM FGDSEVPAEI  480
VQAGVLRCHT PLHSSGKLTI CVTSGNREIC SEVKDFEFRA KSTASSFLDI SPSSRSLKSS  540
EELLLLAKFV RMLLCENGSH ANSNGDPQSV QCPKLKMNDE HWQRLIDELK GGCENPLNVS  600
DWIMEELLKS KLQQWLSVKL QGYDGIACSL SKHEQGIIHL ISALGYEWAL SSILSADVGI  660
NFRDTNGWTA LHWAAYFGRE KMVAALLAAG ASAPAVTDPT AQDPVGKTAA FLASEWGHLG  720
LAAYLSEVSL TSYLASLTIQ ESDTSKGSAA AEAERAVESI SQRNAQLHGG TEDELSLKDS  780
LAAVRNAAQA AARIQNAFRA FSFRKRQQKT ARLKDEYGMT QEDIDELAAA SRSYYQSLLP  840
NGQFYDKAAV SIQKKFKGWK GRRHFLNMRR NAVKIQAHVR GHQVRKKYKT FVSTVSVLEK  900
VILRWRRKGH GLRGFRAEQT AMAEAEEDDE DDDDDDFNDD EAVKVFRRQK VDESVKEAMS  960
RVLSMVDSPE ARMQYRRMLE EFRQATAE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1220010.0AK122001.1 Oryza sativa Japonica Group cDNA clone:J033110J06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635911.10.0calmodulin-binding transcription activator 4 isoform X1
TrEMBLA0A0D9ZJZ80.0A0A0D9ZJZ8_9ORYZ; Uncharacterized protein
STRINGOGLUM04G10170.20.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP62383241
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.11e-149Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains