PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM04G11190.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 88aa MW: 10229.6 Da PI: 6.767

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G11190.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	38.4	3.6e-12	45	87	45	87
DUF260 45 llkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 + ++lp +++ d++sslvyeA+ ++rdPvy +v+ i+ lq+ql OGLUM04G11190.1 45 IRQELPVQQQGDTVSSLVYEANDWMRDPVYDCVRAISFLQNQL 87 668999***********************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03195	9.6E-10	47	87	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 88 aa Download sequence Send to blast
MLIKDYLYHV HSDFIHGKAR LYLQQCGRRD QRVKLPTCAG GSEEIRQELP VQQQGDTVSS 60 LVYEANDWMR DPVYDCVRAI SFLQNQLS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AL731639	4e-73	AL731639.3 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ000315_02, complete sequence.
GenBank	AP014960	4e-73	AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBank	CR855110	4e-73	CR855110.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0502B11, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025806795.1	9e-16	LOB domain-containing protein 12-like
TrEMBL	A0A0D9ZKC8	1e-59	A0A0D9ZKC8_9ORYZ; Uncharacterized protein
STRING	OGLUM04G11190.1	2e-60	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP30777	2	2

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30130.1	3e-15	LBD family protein