PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G11230.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 480aa    MW: 50683.9 Da    PI: 7.2009
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G11230.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix47.25.6e-15100181986
         trihelix   9 aLiearremeerlrrgklkkplWeevskkm....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      +L++ ++++ e+l+rg+l++ +We+v++++     +    +s +qCk+k++nl+kryk + ++  +  + ++s++p+f+++e
  OGLUM04G11230.1 100 DLLDSYTDRFEQLNRGNLRGRDWEDVAAAVtdgqGKSSGGKSVEQCKNKIDNLKKRYKVECQRLAGSGASAVSHWPWFKKME 181
                      5999**************************6655344446899***************888887777677888********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.2E-16101183No hitNo description
Gene3DG3DSA:3.40.1160.103.8E-72236473IPR001048Aspartate/glutamate/uridylate kinase
HamapMF_01220_B32.915238474IPR015963Uridylate kinase, bacteria
SuperFamilySSF536333.27E-55238473IPR001048Aspartate/glutamate/uridylate kinase
PfamPF006962.4E-19241453IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042546.53E-115241474No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006221Biological Processpyrimidine nucleotide biosynthetic process
GO:0046939Biological Processnucleotide phosphorylation
GO:0005737Cellular Componentcytoplasm
GO:0033862Molecular FunctionUMP kinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 480 aa     Download sequence    Send to blast
MASCDDDFGL LGDGPVPEEE AAAAAASSQA APPPPQQQAQ AFCFGDAASV AGAGAGVGPF  60
APMGQEEGNH SAERGKAAAA AAHHSKRGRD RAEEFSDGGD LLDSYTDRFE QLNRGNLRGR  120
DWEDVAAAVT DGQGKSSGGK SVEQCKNKID NLKKRYKVEC QRLAGSGASA VSHWPWFKKM  180
EQIVGNSSSP ASSKALVASD DDNKPRQPQQ HSSKRHAPSG SSTPTFGGSS RLAPPSNPKW  240
KRVLLKIGGT ALAGAPPQNV DPKVIMLIAR EVQVACRHGV EVSIVVGGRN IFCGDTWVSA  300
TGTDRASTYS IGMMASVMNA VLLQASLEKI GVETRVQTAL MMQEVAEPYI RRRAIRHLEK  360
GRVVIFAGIG AGIGNPLFTT DTAAALRASE INADVVLKGT AGDDDYGCPP RGNNNPPFEH  420
ISFRELAARG FSRMDMTAIT CCQENNIPVV IFNMLEPGNI SKAICGDQVG TLVDQSGRIT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1z9d_A1e-612384735238uridylate kinase
1z9d_B1e-612384735238uridylate kinase
1z9d_C1e-612384735238uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1087570.0AK108757.1 Oryza sativa Japonica Group cDNA clone:002-150-G02, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637195.10.0uncharacterized protein LOC4335753
SwissprotQ7VD618e-80PYRH_PROMA; Uridylate kinase
TrEMBLA0A0D9ZKD40.0A0A0D9ZKD4_9ORYZ; Uncharacterized protein
STRINGOGLUM04G11230.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19353442
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.11e-148Trihelix family protein