PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM04G12170.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

FAR1

Protein Properties

Length: 513aa MW: 53930 Da PI: 10.5469

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G12170.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	76.8	4.2e-24	217	305	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 +fY+ Y+ +vGF+vrk++ +ksk++geit+r+f Cs+eg+r++ k+ ++ + + +rtgC+a+l+++++k +k ev+ ++ HnH+l+ OGLUM04G12170.1 217 EFYRYYGWKVGFNVRKEYANKSKKTGEITSRKFACSREGYRANVKRG--NHMVPMPDSRTGCNAHLVIRRKKpGAKLEVYAFQPRHNHPLF 305 6****************************************9988..9999***************9**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-20	217	305	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 513 aa Download sequence Send to blast
MSSPAEPPPP EHPPTPAPAP APASPPPHPA ASGNAPPKPN PPITPAPARN ASAAPPSGSP 60 ATAAAAAPVP SRKESGSTSA AAPAAATRKA SGVAAATTGV LPRKPPGTTA PVAARNIPAT 120 TAASRTATRA TTTTTATSVS RRPAAAAAVA SRIPLRATAA TTTHAASRNP LTGAAAATAT 180 ATVAAVGRGG FRAAPTRPEE YTPRMGMEFE SEHEAYEFYR YYGWKVGFNV RKEYANKSKK 240 TGEITSRKFA CSREGYRANV KRGNHMVPMP DSRTGCNAHL VIRRKKPGAK LEVYAFQPRH 300 NHPLFATSCM PNPLQPNVVH WTTLPDAVTP PDLLMDGENI MDKSSGTTAK ESKKKGQKNK 360 IQSRNCIEKG LRKKQKVHSE QPGEYALLGG SQSGNMFQAF EGPPNMSPLG TQTPTYKTYR 420 GIDLSSPMGP ISYDEMPSGL DPTFTTHLGF ATYHTSQVSS SSPHNQANVK DYPISIRSSI 480 QQLLYIIQLI MPNGAAIFPI GICSTGTIAQ ANL

Sequence ? help Back to Top

Protein Sequence Length: 513 aa Download sequence Send to blast

MSSPAEPPPP EHPPTPAPAP APASPPPHPA ASGNAPPKPN PPITPAPARN ASAAPPSGSP  60
ATAAAAAPVP SRKESGSTSA AAPAAATRKA SGVAAATTGV LPRKPPGTTA PVAARNIPAT  120
TAASRTATRA TTTTTATSVS RRPAAAAAVA SRIPLRATAA TTTHAASRNP LTGAAAATAT  180
ATVAAVGRGG FRAAPTRPEE YTPRMGMEFE SEHEAYEFYR YYGWKVGFNV RKEYANKSKK  240
TGEITSRKFA CSREGYRANV KRGNHMVPMP DSRTGCNAHL VIRRKKPGAK LEVYAFQPRH  300
NHPLFATSCM PNPLQPNVVH WTTLPDAVTP PDLLMDGENI MDKSSGTTAK ESKKKGQKNK  360
IQSRNCIEKG LRKKQKVHSE QPGEYALLGG SQSGNMFQAF EGPPNMSPLG TQTPTYKTYR  420
GIDLSSPMGP ISYDEMPSGL DPTFTTHLGF ATYHTSQVSS SSPHNQANVK DYPISIRSSI  480
QQLLYIIQLI MPNGAAIFPI GICSTGTIAQ ANL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012612	0.0	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
GenBank	CR855155	0.0	CR855155.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0525E10, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025880889.1	1e-150	protein FAR1-RELATED SEQUENCE 12
Refseq	XP_025880890.1	1e-150	protein FAR1-RELATED SEQUENCE 12
Refseq	XP_025880891.1	1e-150	protein FAR1-RELATED SEQUENCE 12
Refseq	XP_025880892.1	1e-150	protein FAR1-RELATED SEQUENCE 12
Refseq	XP_025880893.1	1e-150	protein FAR1-RELATED SEQUENCE 12
Refseq	XP_025880894.1	1e-150	protein FAR1-RELATED SEQUENCE 12
Refseq	XP_025880895.1	1e-150	protein FAR1-RELATED SEQUENCE 12
Refseq	XP_025880896.1	1e-150	protein FAR1-RELATED SEQUENCE 12
Refseq	XP_025880897.1	1e-150	protein FAR1-RELATED SEQUENCE 12
Refseq	XP_025880898.1	1e-150	protein FAR1-RELATED SEQUENCE 12
TrEMBL	A0A0D9ZKQ7	0.0	A0A0D9ZKQ7_9ORYZ; Uncharacterized protein
STRING	OGLUM04G12170.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP15895	9	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G07500.1	2e-17	FAR1 family protein