PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G13050.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 173aa    MW: 19540.9 Da    PI: 6.7321
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G13050.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.44.4e-0799122126
                      --S---SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                      y+ e Cr++++   C++ ++C+FaH+
  OGLUM04G13050.1  99 YGVEVCRDYLK-NMCNR-ESCRFAHP 122
                      899********.*****.*******9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.2124IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.408125IPR000571Zinc finger, CCCH-type
PfamPF146082.5322No hitNo description
SMARTSM003560.732852IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.2913253IPR000571Zinc finger, CCCH-type
PfamPF146080.863350No hitNo description
Gene3DG3DSA:4.10.1000.102.2E-497121IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-498123IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.33898124IPR000571Zinc finger, CCCH-type
PfamPF146080.005104122No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MVCRDFTRGR CSRSANECRF LHHSPLEDCA IVCQDFLRGR CDRKSCRYSH VMAHPMPPPM  60
RDIPMQYPDM VYMPPPAPLG VPMMMPPPSA PAAFSGNNYG VEVCRDYLKN MCNRESCRFA  120
HPDLNNEFAV ILSEENAIDL PVAFTIHLQA QILLDKVNIE CPALLPLLPL CCC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0606340.0AK060634.1 Oryza sativa Japonica Group cDNA clone:001-027-B10, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636418.19e-89zinc finger CCCH domain-containing protein 28 isoform X2
SwissprotQ0JD075e-89C3H28_ORYSJ; Zinc finger CCCH domain-containing protein 28
TrEMBLA0A0E0P9I11e-123A0A0E0P9I1_ORYRU; Uncharacterized protein
STRINGORUFI04G14690.41e-123(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP109041922
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]