PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G13520.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MIKC_MADS
Protein Properties Length: 181aa    MW: 20920.5 Da    PI: 8.8324
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G13520.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF78.45.2e-251058250
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                     rien   rqvtf+kRr g+lKKA+ELSvLCda++ vi++s++gk+ye +
  OGLUM04G13520.1 10 RIENPVHRQVTFCKRRMGLLKKAKELSVLCDADIGVIVLSPHGKIYELA 58
                     8*********************************************965 PP
2K-box57.55.9e-20881711597
            K-box  15 eslqqelakLkkeienLqreqRhllGe.dLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkk 97 
                         qq++  L++e++ Lq+++R + Ge d++ ++l eLq+Le++Le  +++iRs+K++l+ ++ie l++ke  l+ +n  L+++
  OGLUM04G13520.1  88 MVIQQDVLFLRREVDLLQNSLRYMYGEkDINHMNLGELQSLESNLEVWVNNIRSTKMQLMSREIEMLKNKEGILKAANDILQER 171
                      45799*********************868**************************************************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.833161IPR002100Transcription factor, MADS-box
SMARTSM004324.9E-34160IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.27E-27176IPR002100Transcription factor, MADS-box
CDDcd002653.35E-36273No hitNo description
PRINTSPR004042.4E-25323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003193.6E-231056IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004042.4E-253859IPR002100Transcription factor, MADS-box
PfamPF014861.7E-2383172IPR002487Transcription factor, K-box
PROSITE profilePS5129712.58387179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MARGKVQMRR IENPVHRQVT FCKRRMGLLK KAKELSVLCD ADIGVIVLSP HGKIYELATN  60
GNMEGLIERY KSNLPEAQVE RTEQNIPMVI QQDVLFLRRE VDLLQNSLRY MYGEKDINHM  120
NLGELQSLES NLEVWVNNIR STKMQLMSRE IEMLKNKEGI LKAANDILQE RVLLAINSCI  180
L
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001288322.11e-102MADS-box transcription factor 26-like
SwissprotQ2QW551e-70MAD33_ORYSJ; MADS-box transcription factor 33
TrEMBLA0A0D9ZL811e-129A0A0D9ZL81_9ORYZ; Uncharacterized protein
STRINGOGLUM04G13520.11e-129(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP149136112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G71692.11e-55AGAMOUS-like 12