PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G14540.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family EIL
Protein Properties Length: 439aa    MW: 48069.5 Da    PI: 4.6326
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G14540.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3359.94.9e-110443382300
                      XXXXXXXXXXXXXXXXXXXXXX..XXXXX...........XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
             EIN3   2 elkkrmwkdqmllkrlkerkkqlledkeaa..........tgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpve 85 
                      +lkkrmwkdqmll++l++r+ ++ + + +           +++++++ ++ ++rrk+m raQDg+L++Mlk+me+cna+GfvYgi++e+g pv+
  OGLUM04G14540.1  44 DLKKRMWKDQMLLMKLEGRSGHEGALAAQGhrvvrgeeaaAEEEEEEPPEARYRRKAMLRAQDGVLRHMLKMMEACNARGFVYGIVDESGVPVS 137
                      8******************99977655555678877777677777889********************************************** PP

                      XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH---S--H CS
             EIN3  86 gasdsLraWWkekvefdrngpaaiskyqaknlilsgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPWWPtGkel 179
                      g+sdsLr+WWk++v+fdr gp+a+s +       +++s   +++ s  h l ++qD+tlgSLLsal+qhc+ppqr+fpl++g++pPWWPtG e+
  OGLUM04G14540.1 138 GSSDSLRGWWKDDVAFDRVGPTALSGR------GGRGSPA-AAAASFLHGLLDIQDSTLGSLLSALIQHCEPPQRSFPLDRGLPPPWWPTGGEA 224
                      **************************9......3444444.56999************************************************ PP

                      HHHHHT.--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXXXXXXXXXXX CS
             EIN3 180 wwgelg.lskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsahssslrkqsp 272
                      wwg +g ++++qg+ppy+kphdlkkawk+s+L+avikh+sp++++ir+l++qsk+lq+kmsa++ +++++v+ qee++ ++   +         
  OGLUM04G14540.1 225 WWGLQGeAQASQGPPPYRKPHDLKKAWKISLLSAVIKHLSPRFDQIRKLVWQSKRLQHKMSARDADTWSRVITQEEALSRHALRS-------LH 311
                      ****************************************************************************977543333.......22 PP

                      XXXXXXXXXXXXXXXXXXX.XXXXXXXX CS
             EIN3 273 kvtlsceqkedvegkkeskikhvqavkt 300
                       + l+++++e +eg   ++ +h+ ++k+
  OGLUM04G14540.1 312 ITPLDDDDDEPNEGPTPRE-SHADKRKR 338
                      2333333333333333222.44444444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048734.4E-11644300No hitNo description
Gene3DG3DSA:1.10.3180.101.1E-63173307IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167682.35E-56178303IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MDDKGKAKAA DAAAATEAAP EQEEKEEEFL SDSESGCESI EIADLKKRMW KDQMLLMKLE  60
GRSGHEGALA AQGHRVVRGE EAAAEEEEEE PPEARYRRKA MLRAQDGVLR HMLKMMEACN  120
ARGFVYGIVD ESGVPVSGSS DSLRGWWKDD VAFDRVGPTA LSGRGGRGSP AAAAASFLHG  180
LLDIQDSTLG SLLSALIQHC EPPQRSFPLD RGLPPPWWPT GGEAWWGLQG EAQASQGPPP  240
YRKPHDLKKA WKISLLSAVI KHLSPRFDQI RKLVWQSKRL QHKMSARDAD TWSRVITQEE  300
ALSRHALRSL HITPLDDDDD EPNEGPTPRE SHADKRKREV GGGEEMQLSL PVDIDVVPEA  360
DRSSIDELMK LYYSCLQGTD TDGSGEQGKD GAGGDGSVAP ETVHVDDADM LEGLLGVAQV  420
VDMSDFPDSP IWHWGSSSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A2e-491793044128Protein ETHYLENE INSENSITIVE 3
4zds_B2e-491793044128Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that may be involved in the ethylene response pathway. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR8551640.0CR855164.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: H0523F07, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015635387.10.0ETHYLENE INSENSITIVE 3-like 5 protein
SwissprotQ9FJQ53e-90EIL5_ARATH; ETHYLENE INSENSITIVE 3-like 5 protein
TrEMBLA0A0D9ZLM00.0A0A0D9ZLM0_9ORYZ; Uncharacterized protein
STRINGOGLUM04G14540.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63838168
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65100.18e-87EIL family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]