PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G16790.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C3H
Protein Properties Length: 172aa    MW: 18677.1 Da    PI: 9.3303
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G16790.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.51.9e-07143162626
                      -SGGGGTS--TTTTT-SS-SS CS
          zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                      C +f++ G C++Gd C FaHg
  OGLUM04G16790.1 143 CLDFRK-GGCNHGDACEFAHG 162
                      999999.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003563.3E-4138163IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010310.962142164IPR000571Zinc finger, CCCH-type
PfamPF006421.7E-5142162IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5143163IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0016021Cellular Componentintegral component of membrane
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MTESTKIKYC RADSGSGSGS KPLSAETKTR LMADGKKIDE EKKDGTAVRR VLFWFAVLVI  60
RFALLMAMHY YHVRMMAKLE GTNNDGFGLF LTCSHYDVTS SRCDGARAGG ARTGRSALSR  120
VRGRRRGGGT PDTRPYCDSG TACLDFRKGG CNHGDACEFA HGVFDNSSAD LA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL6629461e-144AL662946.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ991113_30, complete sequence.
GenBankAP0149601e-144AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126121e-144CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
SwissprotQ7XSB26e-90C3H29_ORYSJ; Putative zinc finger CCCH domain-containing protein 29
TrEMBLA0A0D9ZME81e-123A0A0D9ZME8_9ORYZ; Uncharacterized protein
STRINGOGLUM04G16790.11e-123(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2346255
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29190.12e-11C3H family protein