PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM04G17340.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 492aa MW: 52669.4 Da PI: 8.1567

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G17340.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	34.2	5.5e-11	271	329	5	63
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l++l+ l+se+ OGLUM04G17340.1 271 KRAKRILANRQSAARSKERKMRYIAELERKVQTLQTEATTLSAQLSMLQRDTTGLTSEN 329 9***********************************************99999998887 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	5.9E-18	267	331	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	11.139	269	332	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	4.22E-11	271	326	No hit	No description
Pfam	PF00170	2.3E-9	271	329	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.4E-11	271	326	No hit	No description
CDD	cd14703	6.11E-24	272	321	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 492 aa Download sequence Send to blast
MAESRIFGGL KPTKSRLLGP TIRGPPPNGA ATHAPRRILF SFSFSPESQW LGQSSTRACL 60 PPLRSPCLPA PSTASPAYPR LASSAAFASA PARLRSRITL PGGRSPVPPM DPAASAAESS 120 SLSSRDVAAM PDSPPRRAAR HRRAQSEILL GAALPDDIAF DADLGVVGEV GGGGGDDYEE 180 EEDDEEEEME GAGGSRMFEM FLEAGGKLET PEPAAPLPPP PTRPRHQHSM SMDGSTSLAS 240 SAAGVAGRMG ADAKKAISDA KLAELALVDP KRAKRILANR QSAARSKERK MRYIAELERK 300 VQTLQTEATT LSAQLSMLQR DTTGLTSENS DLKIRVQTME QQVRLQDALN DRLRDEIQQL 360 KVATGQVNAN CGKVGNFGLS SFGGANPQGY QRSHIQSLLA AQQLQQLQIH SQHQQQQMHL 420 QQHHHLSTVQ QQLLQEGLPL PGDLKMKGIA AASHAQNAGA SESHALRSEP PVNASFGNPW 480 LTTALLLLLL QE

Sequence ? help Back to Top

Protein Sequence Length: 492 aa Download sequence Send to blast

MAESRIFGGL KPTKSRLLGP TIRGPPPNGA ATHAPRRILF SFSFSPESQW LGQSSTRACL  60
PPLRSPCLPA PSTASPAYPR LASSAAFASA PARLRSRITL PGGRSPVPPM DPAASAAESS  120
SLSSRDVAAM PDSPPRRAAR HRRAQSEILL GAALPDDIAF DADLGVVGEV GGGGGDDYEE  180
EEDDEEEEME GAGGSRMFEM FLEAGGKLET PEPAAPLPPP PTRPRHQHSM SMDGSTSLAS  240
SAAGVAGRMG ADAKKAISDA KLAELALVDP KRAKRILANR QSAARSKERK MRYIAELERK  300
VQTLQTEATT LSAQLSMLQR DTTGLTSENS DLKIRVQTME QQVRLQDALN DRLRDEIQQL  360
KVATGQVNAN CGKVGNFGLS SFGGANPQGY QRSHIQSLLA AQQLQQLQIH SQHQQQQMHL  420
QQHHHLSTVQ QQLLQEGLPL PGDLKMKGIA AASHAQNAGA SESHALRSEP PVNASFGNPW  480
LTTALLLLLL QE

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor with an activatory role.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CR855196	0.0	CR855196.1 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSIGBa0159F11, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015633411.1	0.0	transcription factor RF2a-like
Swissprot	Q04088	3e-83	POF21_ARATH; Probable transcription factor PosF21
TrEMBL	A0A0D9ZML2	0.0	A0A0D9ZML2_9ORYZ; Uncharacterized protein
STRING	OGLUM04G17340.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP12302	29	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G06070.1	5e-65	bZIP family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Xu C, et al. Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration. Nat Plants, 2018. 4(2): p. 108-115 [PMID:29358751]