PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM04G20360.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Trihelix

Protein Properties

Length: 209aa MW: 22676.9 Da PI: 10.7441

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G20360.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	29.5	2e-09	24	85	1	65
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkik 65 +Wt +e+laL +a++ + +++r+ l ++W++v+++ ++++ qC++k e+l++r + + OGLUM04G20360.1 24 CWTPDETLALARAYTARRLAVGRAHLTSADWAAVADAATP---TKTARQCRHKVEKLRRRLRSKR 85 8********************************98766...57889*********998766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.0E-7	23	86	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.1E-4	25	81	IPR009057	Homeodomain-like
PROSITE profile	PS50090	6.249	25	78	IPR017877	Myb-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 209 aa Download sequence Send to blast
MASSSPINAA AAAAAAARRV PPPCWTPDET LALARAYTAR RLAVGRAHLT SADWAAVADA 60 ATPTKTARQC RHKVEKLRRR LRSKRRRPCP LLDAIDLLDG PSPSASPSQS PSPPPPASPP 120 PLPPAPSSPP PKKRRLPDAD ADADAEDDGE SDVVKALRAI GEGFLRAEQR RMEAARKTQQ 180 MRMEMALRHL DSQRRLMEAL VDRIIDSLE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	75	81	KLRRRLR
2	76	82	LRRRLRS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012612	0.0	CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006653630.1	5e-84	PREDICTED: leiomodin-2-like, partial
TrEMBL	A0A0D9ZNS0	1e-141	A0A0D9ZNS0_9ORYZ; Uncharacterized protein
STRING	OGLUM04G20360.1	1e-141	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP13911	20	24