PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G20600.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 317aa    MW: 33023.6 Da    PI: 4.7654
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G20600.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP263.83.5e-20151201255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+++AeIrdp +ng  +r++lg+f+tae+Aa a+++a+ +++g
  OGLUM04G20600.1 151 HYRGVRQRP-WGKFAAEIRDPAKNG--ARVWLGTFDTAEDAALAYDRAAYRMRG 201
                      8********.***********9987..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.4E-32150209IPR001471AP2/ERF domain
CDDcd000182.35E-30150209No hitNo description
SMARTSM003805.9E-39151215IPR001471AP2/ERF domain
PROSITE profilePS5103224.276151209IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-23151211IPR016177DNA-binding domain
PfamPF008473.9E-14151201IPR001471AP2/ERF domain
PRINTSPR003675.2E-11152163IPR001471AP2/ERF domain
PRINTSPR003675.2E-11175191IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MARSVLRNHP EASVLDTIRQ HLLEEPRGGG GGEAAEASFG SLVADMWSDS LPFRDDDADD  60
MVVFGAMRDA FSCGWLPDGV FAEVKLEPLL SPDSSSYDGS SCCFGFADVS EPVTPSDAAS  120
GAAEAAAAAA AATAEHGKEE EAAAAVARGK HYRGVRQRPW GKFAAEIRDP AKNGARVWLG  180
TFDTAEDAAL AYDRAAYRMR GSRALLNFPL RIGSEIAAAA AAAAAAAAGD KRPSPEPATS  240
ESSFSSSSSC TTTTTSSSTS SSGSPKRRKR GEAAAASMSM PLVPPPSQLN WPVQAWYPAA  300
APVEQVAITP RVEQLVI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-40147214168ATERF1
3gcc_A7e-40147214168ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2431880.0AK243188.1 Oryza sativa Japonica Group cDNA, clone: J100039E18, full insert sequence.
GenBankAL6070060.0AL607006.4 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0079A21, complete sequence.
GenBankAP0149600.0AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankEF0618880.0EF061888.1 Oryza sativa (japonica cultivar-group) development related ERF protein (DRE) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636763.10.0ethylene-responsive transcription factor 2
TrEMBLA0A0D9ZNU70.0A0A0D9ZNU7_9ORYZ; Uncharacterized protein
STRINGOGLUM04G20600.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38002972
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17500.12e-32ethylene responsive element binding factor 1