PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM04G23960.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

G2-like

Protein Properties

Length: 251aa MW: 27974.9 Da PI: 9.2938

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G23960.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	107.4	7.9e-34	23	77	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWtp+LHerFv+av++LGG++kAtPk++l+lm++kgLtl+h+kSHLQkYRl OGLUM04G23960.1 23 KPRLRWTPDLHERFVDAVTRLGGPDKATPKSVLRLMGMKGLTLYHLKSHLQKYRL 77 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	3.5E-33	20	79	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.502	20	80	IPR017930	Myb domain
SuperFamily	SSF46689	1.43E-16	23	79	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.1E-24	23	78	IPR006447	Myb domain, plants
Pfam	PF00249	2.4E-9	25	76	IPR001005	SANT/Myb domain
Pfam	PF14379	3.2E-21	96	138	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 251 aa Download sequence Send to blast
MFEGCYGGVG SAAAAAAATR DPKPRLRWTP DLHERFVDAV TRLGGPDKAT PKSVLRLMGM 60 KGLTLYHLKS HLQKYRLGRQ SKKSAGLELA VADSGDALKY QVEVQRKLQE QLEVQKKLQM 120 RIEAQGRYLK EILEKAQKNI SLDANGSANL SSTRSQITDI NLALSGFMDN ATQVQEENNE 180 LMKPISDDNL KVNNLGFQLY HLGSQESKDV KCTPKTEELL LLDLNIQGGY ELSSRGMQGC 240 ELDLKINQQR R

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-21	23	79	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-21	23	79	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-21	23	79	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-21	23	79	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK106400	0.0	AK106400.1 Oryza sativa Japonica Group cDNA clone:002-102-G05, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015635408.1	1e-171	myb family transcription factor PHL11 isoform X1
Refseq	XP_015635409.1	1e-171	myb family transcription factor PHL11 isoform X2
Swissprot	C0SVS4	3e-60	PHLB_ARATH; Myb family transcription factor PHL11
TrEMBL	A0A0D9ZQ57	0.0	A0A0D9ZQ57_9ORYZ; Uncharacterized protein
STRING	OGLUM04G23960.1	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3940	34	70

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G45580.1	2e-47	G2-like family protein

Publications ? help Back to Top
Petridis A,Döll S,Nichelmann L,Bilger W,Mock HP Arabidopsis thaliana G2-LIKE FLAVONOID REGULATOR and BRASSINOSTEROID ENHANCED EXPRESSION1 are low-temperature regulators of flavonoid accumulation. New Phytol., 2016. 211(3): p. 912-25 [PMID:27125220]