PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM04G24370.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

TCP

Protein Properties

Length: 212aa MW: 21545 Da PI: 6.9612

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM04G24370.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	46.5	1.4e-14	65	98	35	68
TCP 35 LqdeLGfdkdsktieWLlqqakpaikeltgtsss 68 L++eLG++++++t++WLlqqa+pai +tgt+ s OGLUM04G24370.1 65 LTRELGHKSNGETVQWLLQQAEPAIVTATGTGVS 98 8******************************433 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	5.6E-10	65	98	IPR005333	Transcription factor, TCP

Sequence ? help Back to Top
Protein Sequence Length: 212 aa Download sequence Send to blast
MWGPPEDASA RREGEDPLSA AADIGGGGGG GGEEDAGARA EVELEQGPAH QGGRPGTTNP 60 DAGVLTRELG HKSNGETVQW LLQQAEPAIV TATGTGVSVD IPRALPPFPK LRPLQVAPPP 120 PPHVGCRRRA ARRVRGVRRC HIGFVTMFAG HAAAAMPGLE LGLSQDGHIG VLSARSLSQF 180 YHQVGGADAA DQLPHPAASS PTPSAAAGGR GG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	CP012610	1e-176	CP012610.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 2 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015624510.2	3e-41	LOW QUALITY PROTEIN: transcription factor TCP20
TrEMBL	A0A0D9ZQA8	1e-146	A0A0D9ZQA8_9ORYZ; Uncharacterized protein
STRING	OGLUM04G24370.1	1e-147	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2864	32	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G58100.1	9e-13	TCP family protein