PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G25750.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family LBD
Protein Properties Length: 186aa    MW: 19326.6 Da    PI: 6.4966
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G25750.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26024.11e-07159181325
           DUF260   3 aaCkvlrrkCakdCvlapyfpae 25 
                      aaC++l+r+C+++C+la+yfpa+
  OGLUM04G25750.1 159 AACAHLGRTCPPGCPLARYFPAA 181
                      8********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508918.73156186IPR004883Lateral organ boundaries, LOB
PfamPF031956.3E-5159183IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 186 aa     Download sequence    Send to blast
MAGFQGTGYE VAVDSLLTAQ LHPDTAHIEC QCQDEEPPSR LCDQQQNPNA WDPLPLHPRT  60
DGRGVIGRCL LLSLPPGHPS SPAGERARRG KKAAAGEGGG DDRGPHPLRA SSSSADAIAG  120
LPASFLPAHL AGHRALLHHL PSPFGLGTTM TDDPSAAYAA CAHLGRTCPP GCPLARYFPA  180
AGDQPD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8721222e-49AB872122.1 Oryza sativa Japonica Group DNA, contig15 of clone: 26F8 contains whole region of Pikahei-1(t), cultivar: Kahei.
GenBankAL6066452e-49AL606645.2 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053K19, complete sequence.
GenBankAP0149602e-49AP014960.1 Oryza sativa Japonica Group DNA, chromosome 4, cultivar: Nipponbare, complete sequence.
GenBankCP0126122e-49CP012612.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0D9ZQX61e-129A0A0D9ZQX6_9ORYZ; Uncharacterized protein
STRINGOGLUM04G25750.11e-130(Oryza glumipatula)