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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | OGLUM04G25770.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family | LBD | ||||||||
| Protein Properties | Length: 77aa MW: 8119.05 Da PI: 4.4554 | ||||||||
| Description | LBD family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | DUF260 | 35.3 | 3.3e-11 | 1 | 43 | 58 | 100 |
DUF260 58 msslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100
m+s++yeA+a+a dPv+Ga gv+l+l++ql++lk++la+++++
OGLUM04G25770.1 1 MASVAYEADAQAADPVRGADGVVLDLERQLDCLKTDLATTQSK 43
89*************************************9987 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| Pfam | PF03195 | 1.9E-7 | 1 | 41 | IPR004883 | Lateral organ boundaries, LOB |
| Sequence ? help Back to Top |
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| Protein Sequence Length: 77 aa Download sequence Send to blast |
MASVAYEADA QAADPVRGAD GVVLDLERQL DCLKTDLATT QSKLALYRRR YAEPPPADAA 60 AAATAGTDTL DRARALN |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_015638310.1 | 7e-18 | LOB domain-containing protein 24 | ||||
| TrEMBL | A0A0D9ZQX9 | 4e-45 | A0A0D9ZQX9_9ORYZ; Uncharacterized protein | ||||
| STRING | OGLUM04G25770.1 | 7e-46 | (Oryza glumipatula) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Monocots | OGMP18117 | 8 | 10 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G16530.1 | 1e-07 | ASYMMETRIC LEAVES 2-like 9 | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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