PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM04G27380.2
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family AP2
Protein Properties Length: 493aa    MW: 52458.3 Da    PI: 8.2356
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM04G27380.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.46.2e-17110159155
              AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                      s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  OGLUM04G27380.2 110 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAHAAARAYDRAAIKFRG 159
                      78*******************......55************************997 PP
2AP226.61.5e-082502851155
              AP2  11 krgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      ++  ++++         +++++lg f+t+eeAa+a+++a+ k +g
  OGLUM04G27380.2 250 SSCGFLVH---------CRYVYLGLFDTEEEAARAYDRAAIKCNG 285
                      23334444.........6**********************99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.7E-9110159IPR001471AP2/ERF domain
SuperFamilySSF541711.05E-15110168IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.6E-17111167IPR001471AP2/ERF domain
SMARTSM003801.8E-31111173IPR001471AP2/ERF domain
PROSITE profilePS5103217.701111167IPR001471AP2/ERF domain
CDDcd000183.15E-19202295No hitNo description
PfamPF008479.2E-7202285IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.9E-14203224IPR001471AP2/ERF domain
SMARTSM003807.3E-26203299IPR001471AP2/ERF domain
PROSITE profilePS5103215.251203293IPR001471AP2/ERF domain
PRINTSPR003676.6E-6204215IPR001471AP2/ERF domain
SuperFamilySSF541713.07E-10256295IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.105.9E-14257293IPR001471AP2/ERF domain
PRINTSPR003676.6E-6275295IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MWDLNDSPAA EAAPPPLSPS ADDSGASSSS AAAVVEIPDD ADDDSAAVVV VTRQFFPPAV  60
PGGGGDPAPG NARAGWLRLA GAAPPVAATG PAASAAVSKK SRRGPRSRSS QYRGVTFYRR  120
TGRWESHIWD CGKQVYLGGF DTAHAAARAY DRAAIKFRGV EADINFSLED YEDDLKQMSN  180
LTKEEFVHVL RRQSTGFPRG SSKYRGVTLH KCGRWEARMG QFLGKKYVLI DHRFFLFRSI  240
VRSWAISRKS SCGFLVHCRY VYLGLFDTEE EAARAYDRAA IKCNGKDAVT NFDPSIYAGE  300
FEPPAAATGD AAEHNLDLSL GSSAGSKRGN VDGGGDDEIT GGGGGGAGSD QRVPMAFDLD  360
WQTAAARSTK AKFDQNSNHP QMPPVLQVTH LPFSPRHHHQ FLSNGDPGTA GGLSLTIGAG  420
MAGHWPPQQQ QGWGNAGGMS WPLPPHPPPP PTNAAAAATA TAAAASSRFP PYIATQASTW  480
LQKNGFHSLT RPT
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor (PubMed:22408071). Involved in spikelet transition and development (PubMed:22408071). Prevents lemma and palea elongation as well as grain growth (PubMed:22408071). Required for seed shattering through specifying abscission zone (AZ) development (PubMed:22408071). {ECO:0000269|PubMed:22408071}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFO0822800.0FO082280.1 Oryza rufipogon (W1943) shattering abortion 1(SHAT1) gene: OR_W1943_CDS_SHAT1, PCR product.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015636848.10.0AP2-like ethylene-responsive transcription factor TOE3 isoform X1
SwissprotB8AVJ90.0APL25_ORYSI; APETALA2-like protein 5
TrEMBLA0A0E0PEX10.0A0A0E0PEX1_ORYRU; Uncharacterized protein
STRINGORUFI04G29120.40.0(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55143658
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.22e-83AP2 family protein
Publications ? help Back to Top
  1. Zhou Y, et al.
    Genetic control of seed shattering in rice by the APETALA2 transcription factor shattering abortion1.
    Plant Cell, 2012. 24(3): p. 1034-48
    [PMID:22408071]