PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G00230.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 216aa    MW: 23571.1 Da    PI: 9.9258
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G00230.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH28.52.7e-0972119455
                      HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
              HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                      +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + + Y++sLq
  OGLUM05G00230.1  72 SHSLAERVRREKISERMKMLQSLVPGC----DKVTGKALMLDEIISYVQSLQ 119
                      8*************************9....555*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.61E-1166123No hitNo description
SuperFamilySSF474598.77E-1866138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.67568118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-1768139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.4E-672119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.5E-1074124IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MGQGAQDASW GKSRKHKRSN VGLKGLEEKK ARRVVLHQHD DDVKKKAKEA AGGEPPAGYI  60
HVRARRGQAT DSHSLAERVR REKISERMKM LQSLVPGCDK VTGKALMLDE IISYVQSLQN  120
QVEFLSMKLA SLSPLMYEFG PGIDMHPDVL RQLAKMPHEM VQCMGQMGST GISLQGLGGG  180
PTGFAQDGSS HMNMVVMQVG EQGQQQGSLH QTNAAI
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0658640.0AK065864.1 Oryza sativa Japonica Group cDNA clone:J013044E05, full insert sequence.
GenBankHQ8588530.0HQ858853.1 Oryza sativa Japonica Group isolate UT1616 bHLH transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881093.11e-152transcription factor BHLH094-like isoform X3
SwissprotQ93W882e-52BH137_ARATH; Transcription factor bHLH137
TrEMBLA0A0D9ZT231e-157A0A0D9ZT23_9ORYZ; Uncharacterized protein
STRINGOGLUM05G00230.31e-148(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50915.28e-50bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]