PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G03850.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GATA
Protein Properties Length: 64aa    MW: 6427.28 Da    PI: 8.5134
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G03850.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA51.81.1e-163159129
             GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGly 29
                     C+ Cg+t+Tp+WR gp g ++LCnaCG++
  OGLUM05G03850.1 31 CVECGATTTPMWRGGPTGRRSLCNACGIR 59
                     ****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.2422558IPR000679Zinc finger, GATA-type
SMARTSM004017.0E-52564IPR000679Zinc finger, GATA-type
SuperFamilySSF577163.33E-112859No hitNo description
Gene3DG3DSA:3.30.50.107.0E-132959IPR013088Zinc finger, NHR/GATA-type
PROSITE patternPS0034403156IPR000679Zinc finger, GATA-type
PfamPF003208.8E-143159IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 64 aa     Download sequence    Send to blast
MGSSDQKVIG IAAAAAAAAA AEEEEAGRRC CVECGATTTP MWRGGPTGRR SLCNACGIRR  60
GGKS
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCT8377515e-78CT837751.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCRA108M06, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006655008.12e-23PREDICTED: GATA transcription factor 23-like
RefseqXP_015692844.12e-23PREDICTED: GATA transcription factor 23-like
SwissprotQ8LC593e-14GAT23_ARATH; GATA transcription factor 23
TrEMBLA0A0D9ZUF54e-36A0A0D9ZUF5_9ORYZ; Uncharacterized protein
STRINGOGLUM05G03850.16e-37(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67212854
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G26930.13e-14GATA transcription factor 23
Publications ? help Back to Top
  1. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  2. Murphy E, et al.
    RALFL34 regulates formative cell divisions in Arabidopsis pericycle during lateral root initiation.
    J. Exp. Bot., 2016. 67(16): p. 4863-75
    [PMID:27521602]