PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM05G04450.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

LBD

Protein Properties

Length: 214aa MW: 22097.2 Da PI: 8.8075

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM05G04450.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	129	2.1e-40	31	130	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +CaaCk+lrr+Ca++C+++pyf +p+kfa vhk+FGasnv+k+l +++e++r da++slvyeA+ r+rdPvyG++g il+lqqq++ l+ael OGLUM05G04450.1 31 PCAACKLLRRRCAQECPFSPYFSPLEPHKFASVHKVFGASNVSKMLLEVHESQRGDAANSLVYEANLRLRDPVYGCMGAILTLQQQVQALEAEL 124 7********************************************************************************************* PP DUF260 95 allkee 100 a++++ OGLUM05G04450.1 125 AAVRAD 130 *99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	25.227	30	131	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.0E-40	31	128	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 214 aa Download sequence Send to blast
MMARRSCSMP AAGAGPGSAA AAAAAVNTIT PCAACKLLRR RCAQECPFSP YFSPLEPHKF 60 ASVHKVFGAS NVSKMLLEVH ESQRGDAANS LVYEANLRLR DPVYGCMGAI LTLQQQVQAL 120 EAELAAVRAD IARHKYRLPS AAAVLPSSHA SHLLAAAAAA RQLPVAGTMG VVTTATLPAS 180 ASSSSTTAVY AAAAAASSST DYSSITNENV PYFS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-40	31	134	11	114	LOB family transfactor Ramosa2.1
5ly0_B	7e-40	31	134	11	114	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC134341	0.0	AC134341.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0027N19, complete sequence.
GenBank	AP014961	0.0	AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025881485.1	1e-117	LOB domain-containing protein 15 isoform X1
Swissprot	Q9AT61	2e-66	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A0D9ZUP1	1e-151	A0A0D9ZUP1_9ORYZ; Uncharacterized protein
STRING	OGLUM05G04450.1	1e-152	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2630	38	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	7e-58	LOB domain-containing protein 13

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]