PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G05910.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 269aa    MW: 29102.7 Da    PI: 10.6535
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G05910.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.64.9e-2160110255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      +++GVr+++ +grW+AeIrdp+eng  +r++lg+f+tae Aa+a++ a ++l+g
  OGLUM05G05910.1  60 RFTGVRRRP-WGRWAAEIRDPKENG--RRVWLGTFDTAEAAAAAYDDACLRLRG 110
                      689******.***********9998..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103223.70960118IPR001471AP2/ERF domain
PfamPF008473.4E-1460110IPR001471AP2/ERF domain
CDDcd000185.73E-1360118No hitNo description
SMARTSM003801.9E-2960124IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-2860119IPR001471AP2/ERF domain
PRINTSPR003671.9E-96172IPR001471AP2/ERF domain
SuperFamilySSF541715.82E-2161119IPR016177DNA-binding domain
PRINTSPR003671.9E-984100IPR001471AP2/ERF domain
PRINTSPR012183.8E-5125148IPR003882Pistil-specific extensin-like protein
PRINTSPR012183.8E-5159177IPR003882Pistil-specific extensin-like protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005199Molecular Functionstructural constituent of cell wall
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MAMEGEVEGG GRRRVVRIIF RDEDATDSSS SEEEGEGEVV AARRVVVKRT RLRCQEVERR  60
FTGVRRRPWG RWAAEIRDPK ENGRRVWLGT FDTAEAAAAA YDDACLRLRG PGAALNLPSR  120
RCVAPAPPPP PPPPPPTAEE KKPLLFPLPL PPRKKPLLYP PPLPPKKKPL PPPSPPPQPP  180
LPEKENTPLP PLLLPPKKKP LPPPSPTAAA KEEPIELEHA APPPPFVPRS VWPLLASGGG  240
GKRKKQSGCG GRIPALNTAA AAVEETGRA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-21601191473Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0055160.0AP005516.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBa0066H10.
GenBankAP0057640.0AP005764.5 Oryza sativa Japonica Group genomic DNA, chromosome 7, BAC clone:OSJNBa0016A21.
GenBankAP0149630.0AP014963.1 Oryza sativa Japonica Group DNA, chromosome 7, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645363.12e-78formin-like protein 3
TrEMBLA0A0D9ZV650.0A0A0D9ZV65_9ORYZ; Uncharacterized protein
STRINGOGLUM05G05910.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2364833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51190.11e-15ERF family protein