PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G09300.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 71aa    MW: 8077.19 Da    PI: 6.527
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G09300.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding34.83.8e-11448344
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                      W++eE +l+ +a++ +G g    W++++r mg ++t+ +++ ++
  OGLUM05G09300.1  4 EWSKEENKLFEQAIAYYGEGapdLWHKVSRAMGGTKTADEVRRHF 48
                     7*******************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.221156IPR017930Myb domain
SMARTSM007173.3E-7154IPR001005SANT/Myb domain
SuperFamilySSF466898.22E-12359IPR009057Homeodomain-like
CDDcd001671.60E-6448No hitNo description
Gene3DG3DSA:1.10.10.601.6E-5451IPR009057Homeodomain-like
PfamPF002492.3E-9448IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 71 aa     Download sequence    Send to blast
MASEWSKEEN KLFEQAIAYY GEGAPDLWHK VSRAMGGTKT ADEVRRHFEI LVDDIKLIEA  60
RRVPFPKGGS I
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A3e-185661171RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126151e-101CP012615.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 7 sequence.
GenBankCT8361431e-101CT836143.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCSA059E21, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003569501.14e-32protein RADIALIS-like 3
RefseqXP_003569502.14e-32protein RADIALIS-like 3
RefseqXP_024314815.14e-32protein RADIALIS-like 3
SwissprotQ6NNN04e-20RADL3_ARATH; Protein RADIALIS-like 3
TrEMBLA0A0D9ZWA32e-45A0A0D9ZWA3_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0Q7K03e-45A0A0E0Q7K0_ORYRU; Uncharacterized protein
STRINGOGLUM05G09300.14e-46(Oryza glumipatula)
STRINGORUFI07G12800.15e-46(Oryza rufipogon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP106733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.25e-21RAD-like 6