PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G10480.2
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 411aa    MW: 47179.3 Da    PI: 11.1289
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G10480.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.92e-0771114348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      ++T+ +d+ l++++ +lG + Wk I r +  gRt    k+rw+ ++
  OGLUM05G10480.2  71 PFTARDDDELLRLHYRLGDR-WKEIGRAVY-GRTSRVMKHRWRELR 114
                      79****************99.********9.***********9875 PP
2Myb_DNA-binding30.87e-102152471447
                      HHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  14 davkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++vk+ G ++W+++ar m+ +R++ +c++rw  +
  OGLUM05G10480.2 215 RLVKENGFRRWSRVARSMP-RRSARSCRDRWCHH 247
                      69*****************.***********877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.07E-1327110IPR009057Homeodomain-like
CDDcd001670.002652953No hitNo description
Gene3DG3DSA:1.10.10.603.9E-52953IPR009057Homeodomain-like
PROSITE profilePS512948.00364118IPR017930Myb domain
SMARTSM007178.4E-468116IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.7E-870113IPR009057Homeodomain-like
CDDcd001679.39E-471113No hitNo description
PfamPF002491.7E-571113IPR001005SANT/Myb domain
PROSITE profilePS5129412.838204252IPR017930Myb domain
SMARTSM007170.015208250IPR001005SANT/Myb domain
SuperFamilySSF466892.04E-16212279IPR009057Homeodomain-like
CDDcd001673.19E-7212248No hitNo description
Gene3DG3DSA:1.10.10.601.4E-13213255IPR009057Homeodomain-like
PfamPF002496.8E-8214247IPR001005SANT/Myb domain
PROSITE profilePS500906.411249299IPR017877Myb-like domain
SMARTSM007170.013253301IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-7256298IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006412Biological Processtranslation
GO:0005840Cellular Componentribosome
GO:0003677Molecular FunctionDNA binding
GO:0003735Molecular Functionstructural constituent of ribosome
Sequence ? help Back to Top
Protein Sequence    Length: 411 aa     Download sequence    Send to blast
MDQEVIMATP PLPPPPRARC IVRLKLPPAW TPEEDARLQR LAKENGFRRW SRVVPRQVAP  60
PPRPRDVYHR PFTARDDDEL LRLHYRLGDR WKEIGRAVYG RTSRVMKHRW RELRRGGFLA  120
AAARKEQAAL DMADDMVETS EVEEPADQSL PSLELQRSTL ADTLASSFGS CSLATDHVMD  180
PLAGSLALGK YQFFTIIKIE DVFAGTLVRH PWLPRLVKEN GFRRWSRVAR SMPRRSARSC  240
RDRWCHHLAR DIYHRPFTAR DDDELLCLHY RLGDRWKKIG HAVYGRTSRV MNHRWRELRR  300
SGFLAAAART EQTLDMADDM VESKVEESDQ SLPTTRKSII ASGRKGSLQA GRPSACKPTA  360
VKIADLRRRG GRPHAKIIFA GGRWLVRSAC ENNNRPPTKK KLPPAKIGRK Y
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3zqc_A6e-122172951795MYB3
3zqc_D6e-122172951795MYB3
3zqc_G6e-122172951795MYB3
3zqc_J6e-122172951795MYB3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126180.0CP012618.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 10 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015645964.19e-86transcription factor MYB73
TrEMBLA0A0D9ZWR10.0A0A0D9ZWR1_9ORYZ; Uncharacterized protein
STRINGOGLUM05G10480.20.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3110644
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23290.12e-20myb domain protein 70