PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G12060.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 221aa    MW: 23819.4 Da    PI: 5.7264
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G12060.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP231.74e-1051851855
              AP2 18 eIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                     eIrdp     +  kr +lg+f+taeeAa+ ++ a+++++g
  OGLUM05G12060.1 51 EIRDP-----SlqKRLWLGTFDTAEEAAAVYDDAALRIKG 85
                     79999.....445************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.42E-194493No hitNo description
SMARTSM003806.1E-164499IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.1E-184994IPR001471AP2/ERF domain
PROSITE profilePS5103214.2495193IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-125194IPR016177DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MSPADSLAAG RSRRVGASMP RPKRVRVYFV DADATDTDSS GDERSRPRVR EIRDPSLQKR  60
LWLGTFDTAE EAAAVYDDAA LRIKGSHAVT NFPSDSDTPS AKAKQMKLHP RRHTTPDKTT  120
PSSSTAAAAK ASVPDPKPAP PEEDRANDSS FNPFASPTSV LRYAAADEVT APSFEHLLVE  180
LGDLSAPPPS TKAAEFDWLP WWEGEDFVTA GLTASNAVSV K
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1241410.0AC124141.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OSJNBa0065C11, complete sequence.
GenBankAK1106130.0AK110613.1 Oryza sativa Japonica Group cDNA clone:002-168-H06, full insert sequence.
GenBankAP0149610.0AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637513.11e-127ethylene-responsive transcription factor 3
TrEMBLA0A0D9ZXB51e-155A0A0D9ZXB5_9ORYZ; Uncharacterized protein
STRINGOGLUM05G12060.11e-156(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131402226
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03800.11e-07ERF domain protein 10