PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G13410.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 175aa    MW: 18902.5 Da    PI: 8.9698
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G13410.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM33.81e-101282278
              NAM  2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknrat 78
                      pG + +P+d+elv  yL ++++g++l+l     e+d +++ P++L +  +++ +e +f ++++ k+a+gkr++ ++
  OGLUM05G13410.1 12 LPGPKLDPSDDELVGGYLLRRLQGQPLPL-----EADPLSARPRNLAAD-HGRGDEAFFLAEAQAKNAKGKRQRSTV 82
                     799***********************999.....79**********844.456679999999999999999887654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-11484IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 175 aa     Download sequence    Send to blast
MAAAAAGADG LLPGPKLDPS DDELVGGYLL RRLQGQPLPL EADPLSARPR NLAADHGRGD  60
EAFFLAEAQA KNAKGKRQRS TVEGQSMCVD GGRLRVPDDG RGGGGLAFSH FLPLSPSIVR  120
HIYREGNSVA HTLCRQAYQG RGLWTERVPM PGAVREKIDE DCRGVLHERL CKKNK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17378KGKRQR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882797.14e-36NAC transcription factor 32
TrEMBLA0A0D9ZXT01e-123A0A0D9ZXT0_9ORYZ; Uncharacterized protein
STRINGOGLUM05G13410.11e-124(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP2550713