PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G17360.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family G2-like
Protein Properties Length: 191aa    MW: 19100.3 Da    PI: 9.0051
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G17360.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like34.73.9e-111233355
          G2-like 33 lelmkvkgLtlehvkSHLQkYRl 55
                     ++lm+v+gLt+e+v+SHLQkYRl
  OGLUM05G17360.1  1 MQLMSVDGLTRENVASHLQKYRL 23
                     79********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.4E-11128IPR009057Homeodomain-like
TIGRFAMsTIGR015575.6E-8223IPR006447Myb domain, plants
SuperFamilySSF466893.4E-5227IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MQLMSVDGLT RENVASHLQK YRLYLKRMQG VGNGGGGGGG GGAGAGGSHS SGSGTDAATE  60
HLFATGPVPF LPPGRAPAGG DPYPPFAPMG GHHHHPPQIG HFHHHPAARP LGHYGSGPGA  120
GFDHGFLSRA VAGGGPPVGP PGMHHRMVGP AAGMAMMAPS PFAEELELGS RGGGGGGGRR  180
ELTLFPTTGD H
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1170178RGGGGGGGR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640251.11e-126transcription factor MYBC1
TrEMBLA0A0E0HEF21e-125A0A0E0HEF2_ORYNI; Uncharacterized protein
STRINGONIVA05G17050.11e-126(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP162034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10760.12e-16G2-like family protein