PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G19230.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 181aa    MW: 20172.5 Da    PI: 8.7409
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G19230.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.82.6e-082571347
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                     +W++ Ed+ +  a   ++ +   +W+++a++++ gR++ ++ ++++ +
  OGLUM05G19230.1 25 PWSKAEDKVFESALVAFPEHthnRWALVASRLP-GRSAHEVWEHYRVL 71
                     8***************9999999**********.***********976 PP
2Myb_DNA-binding45.32e-14113157347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE+ l++++ +++G g+W+ I+r   k+Rt+ q+ s+ qk+
  OGLUM05G19230.1 113 PWTEEEHRLFLEGLEKYGRGDWRNISRWSVKTRTPTQVASHAQKF 157
                      8******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007171.5E-72274IPR001005SANT/Myb domain
SuperFamilySSF466897.59E-122477IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.3E-72469IPR009057Homeodomain-like
PfamPF002494.3E-72571IPR001005SANT/Myb domain
CDDcd001671.86E-62572No hitNo description
PROSITE profilePS500906.9342572IPR017877Myb-like domain
PROSITE profilePS5129419.617106162IPR017930Myb domain
SuperFamilySSF466895.18E-18108162IPR009057Homeodomain-like
SMARTSM007172.8E-10110160IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.0E-16110161IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.7E-11112153IPR009057Homeodomain-like
CDDcd001671.58E-10113158No hitNo description
PfamPF002498.0E-11113156IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MAFYGGEMGG SSSSWVAPLV PSSRPWSKAE DKVFESALVA FPEHTHNRWA LVASRLPGRS  60
AHEVWEHYRV LVDDVDLIEC GMVASPGCWD DGAGRGGAQG ASRGGDERRR GVPWTEEEHR  120
LFLEGLEKYG RGDWRNISRW SVKTRTPTQV ASHAQKFFIR QANAGNRSDS KRKSIHDIIA  180
P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A6e-142292777RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126130.0CP012613.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015638220.11e-108transcription factor DIVARICATA
SwissprotQ8S9H74e-50DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A0D9ZZV01e-130A0A0D9ZZV0_9ORYZ; Uncharacterized protein
STRINGOGLUM05G19230.11e-131(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP28953687
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.18e-46MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]