PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM05G19350.3

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bZIP

Protein Properties

Length: 574aa MW: 63517.9 Da PI: 9.6539

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM05G19350.3	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	36.7	9.3e-12	259	306	4	48
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHH...HHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLee...kvkeLeaeNkaLkke 48 k err+++NReAAr+sR+RKka++++Le+ + +++e+e ++ +++ OGLUM05G19350.3 259 AKTERRLAQNREAARKSRLRKKAYVQQLETsriRLQQIEQELQRARSQ 306 699*************************97222444555444444444 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	2.5E-7	256	323	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	9.381	258	302	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	5.5E-9	259	312	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.94E-7	260	306	No hit	No description
Gene3D	G3DSA:1.20.5.170	2.6E-8	260	306	No hit	No description
PROSITE pattern	PS00036	0	263	278	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	5.8E-29	346	420	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 574 aa Download sequence Send to blast
MGLRVAYWPK GLYLNASSPA TRIVSRSSRP SAAVAGGRRR PLPLKKGGNN TLNIRPLPPL 60 AATESTARLL SSTAGGVRLH RSHGKSRIGL QYKSQRVEAK KSELQPAAAA YFGELEKALI 120 HGTSAGAGVD HGMIQSDAYT EPAGYLAARP PTLEIFPSWP MSHLQEPYSN SQSVGSTTDS 180 SSAQNTMSQA ELVSPASMRS DSGQEQQQQE VLMVTIDDYN YKQGLGAAIA TAPSFQQHAG 240 GLDMRKHGST RKDGKLLDAK TERRLAQNRE AARKSRLRKK AYVQQLETSR IRLQQIEQEL 300 QRARSQVPTL RKPHKIATSN NTILTKGAVM FDMEYTRWID DDSKCMAELQ GALQAQLPDG 360 NLGAIVEECM RHYDELFHLR AVLASSDVFH LMTGMWAAPA ERCFLWMAGF RPSEILKMLI 420 PQLDPLTEQQ LMGMCSLQQS SEQTEEALAQ GLHQLHQSLA DAVGGGPLND GADVANYTGL 480 MALALGRLEN LESFYRQADN LRQETLHHMR RILTTRQTAR CFLSIGEYNR RLRALSSLWA 540 SRPRENFIAT ENVSPTGTEF QVIQQSQQNQ FSGF

Sequence ? help Back to Top

Protein Sequence Length: 574 aa Download sequence Send to blast

MGLRVAYWPK GLYLNASSPA TRIVSRSSRP SAAVAGGRRR PLPLKKGGNN TLNIRPLPPL  60
AATESTARLL SSTAGGVRLH RSHGKSRIGL QYKSQRVEAK KSELQPAAAA YFGELEKALI  120
HGTSAGAGVD HGMIQSDAYT EPAGYLAARP PTLEIFPSWP MSHLQEPYSN SQSVGSTTDS  180
SSAQNTMSQA ELVSPASMRS DSGQEQQQQE VLMVTIDDYN YKQGLGAAIA TAPSFQQHAG  240
GLDMRKHGST RKDGKLLDAK TERRLAQNRE AARKSRLRKK AYVQQLETSR IRLQQIEQEL  300
QRARSQVPTL RKPHKIATSN NTILTKGAVM FDMEYTRWID DDSKCMAELQ GALQAQLPDG  360
NLGAIVEECM RHYDELFHLR AVLASSDVFH LMTGMWAAPA ERCFLWMAGF RPSEILKMLI  420
PQLDPLTEQQ LMGMCSLQQS SEQTEEALAQ GLHQLHQSLA DAVGGGPLND GADVANYTGL  480
MALALGRLEN LESFYRQADN LRQETLHHMR RILTTRQTAR CFLSIGEYNR RLRALSSLWA  540
SRPRENFIAT ENVSPTGTEF QVIQQSQQNQ FSGF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response. {ECO:0000250\|UniProtKB:Q7X993}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK109520	0.0	AK109520.1 Oryza sativa Japonica Group cDNA clone:002-113-G01, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025881194.1	0.0	transcription factor TGAL5 isoform X2
Swissprot	Q6F2N0	0.0	TGAL5_ORYSJ; Transcription factor TGAL5
TrEMBL	A0A0D9ZZW4	0.0	A0A0D9ZZW4_9ORYZ; Uncharacterized protein
STRING	OGLUM05G19350.3	0.0	(Oryza glumipatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3809	31	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.2	1e-124	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]