PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM05G19360.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 345aa MW: 37551.5 Da PI: 8.4914

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM05G19360.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.2	6.8e-06	169	188	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ C+k F+r n++ H+ OGLUM05G19360.1 169 FVCHVCNKAFNRYNNMQMHM 188 89*****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.94E-5	165	192	No hit	No description
PROSITE profile	PS50157	10.388	169	196	IPR007087	Zinc finger, C2H2
Gene3D	G3DSA:3.30.160.60	1.8E-5	169	188	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	171	191	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50868	8.135	214	230	IPR003616	Post-SET domain
SuperFamily	SSF57667	5.87E-5	240	276	No hit	No description
Gene3D	G3DSA:3.30.160.60	4.5E-4	242	276	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 345 aa Download sequence Send to blast
MVLRACTMVE GSSFVVGGGG GVPFFEWLKP RSSPPPSPSS SSTTTTSSSL TAQRQPRGAG 60 TMLCLPLLGR LGEEPVDADD GGAMNNPPVK EEEEETEDDE EKAAGLEGCK VEEEEREQVH 120 SEGSKYYVSV GGGEDQSSNA GDVDAGAACR GRRYWIPTPA QILIGPVQFV CHVCNKAFNR 180 YNNMQMHMWG HGREYRKGPE SLKGTQATAT LAMLKLPCYC CAAGCRNNVG HPRARPLKDF 240 RTLQTHYKRK HGAKPFACRR CAKPFAVKGD WRTHEKNCGK RWFCACGSDF KHKRSLNDHV 300 RSFGGGHFPV AAAAAHAAAA PPKQQQRIIR FDDAMAPMHG GGLMN

Sequence ? help Back to Top

Protein Sequence Length: 345 aa Download sequence Send to blast

MVLRACTMVE GSSFVVGGGG GVPFFEWLKP RSSPPPSPSS SSTTTTSSSL TAQRQPRGAG  60
TMLCLPLLGR LGEEPVDADD GGAMNNPPVK EEEEETEDDE EKAAGLEGCK VEEEEREQVH  120
SEGSKYYVSV GGGEDQSSNA GDVDAGAACR GRRYWIPTPA QILIGPVQFV CHVCNKAFNR  180
YNNMQMHMWG HGREYRKGPE SLKGTQATAT LAMLKLPCYC CAAGCRNNVG HPRARPLKDF  240
RTLQTHYKRK HGAKPFACRR CAKPFAVKGD WRTHEKNCGK RWFCACGSDF KHKRSLNDHV  300
RSFGGGHFPV AAAAAHAAAA PPKQQQRIIR FDDAMAPMHG GGLMN

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator. {ECO:0000305\|PubMed:20541552}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK102658	0.0	AK102658.1 Oryza sativa Japonica Group cDNA clone:J033101H19, full insert sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015640742.1	0.0	protein TRANSPARENT TESTA 1 isoform X1
Swissprot	Q9SGD1	6e-96	ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBL	A0A0D9ZZW5	0.0	A0A0D9ZZW5_9ORYZ; Uncharacterized protein
STRING	ONIVA05G19190.1	0.0	(Oryza nivara)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20880.1	5e-95	WIP domain protein 4

Publications ? help Back to Top
Zhou X,Meier I Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins. Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5 [PMID:25074908]