PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G19360.3
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 388aa    MW: 42042.9 Da    PI: 6.1904
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G19360.3genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2187.9e-06212231120
                      EEETTTTEEESSHHHHHHHH CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                      ++C+ C+k F+r  n++ H+
  OGLUM05G19360.3 212 FVCHVCNKAFNRYNNMQMHM 231
                      89*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.35E-5208235No hitNo description
Gene3DG3DSA:3.30.160.602.0E-5212231IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.388212239IPR007087Zinc finger, C2H2
PROSITE patternPS000280214234IPR007087Zinc finger, C2H2
PROSITE profilePS508688.135257273IPR003616Post-SET domain
SuperFamilySSF576676.88E-5283319No hitNo description
Gene3DG3DSA:3.30.160.607.1E-4286319IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MVLRACTMVE GSSFVVGGGG GVPFFEWLKP RSSPPPSPSS SSTTTTSSSL TAQRQPRGAG  60
TMLCLPLLGR LGEEPVDADD GGAMNNPPVK EEVSNTTDDY AGVDLNIGLP ATTGGCSSED  120
APMDEDEEDD DDDDEEEETE DDEEKAAGLE GCKVEEEERE QVHSEGSKYY VSVGGGEDQS  180
SNAGDVDAGA ACRGRRYWIP TPAQILIGPV QFVCHVCNKA FNRYNNMQMH MWGHGREYRK  240
GPESLKGTQA TATLAMLKLP CYCCAAGCRN NVGHPRARPL KDFRTLQTHY KRKHGAKPFA  300
CRRCAKPFAV KGDWRTHEKN CGKRWFCACG SDFKHKRSLN DHVRSFGGGH FPVAAAAAHA  360
AAAPPKQQQR IIRFDDAMAP MHGGGLMN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1026580.0AK102658.1 Oryza sativa Japonica Group cDNA clone:J033101H19, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015640742.10.0protein TRANSPARENT TESTA 1 isoform X1
TrEMBLA0A0D9ZZW70.0A0A0D9ZZW7_9ORYZ; Uncharacterized protein
STRINGOGLUM05G19360.30.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44723667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20880.17e-95WIP domain protein 4