PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G20280.2
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 447aa    MW: 49573.9 Da    PI: 8.5567
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G20280.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.38.7e-095592147
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +g WT+eEde+l +av  + g++Wk+I           qc +rwqk+
  OGLUM05G20280.2 55 KGGWTPEEDEKLRKAVDIYNGKNWKKI----E-----VQCLHRWQKV 92
                     688***********************5....3.....4577777775 PP
2Myb_DNA-binding30.68e-1099127129
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIar 29 
                      +g+WT+eEd+ +++ vk++G++ W+ Iar
  OGLUM05G20280.2  99 KGPWTQEEDDVIINMVKKHGPKKWSVIAR 127
                      79*************************97 PP
3Myb_DNA-binding51.81.8e-16138181146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      + +WT eE+  l++a+ ++G++ W+ Ia+ ++ gRt++++k++w++
  OGLUM05G20280.2 138 KEAWTVEEERVLARAHCMYGNK-WAEIAKLLP-GRTDNSIKNHWNS 181
                      579*******************.*********.***********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.175097IPR017930Myb domain
SuperFamilySSF466892.02E-95295IPR009057Homeodomain-like
SMARTSM007171.6E-45495IPR001005SANT/Myb domain
PfamPF002495.3E-65592IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-1357105IPR009057Homeodomain-like
CDDcd001672.19E-85893No hitNo description
PROSITE profilePS500907.99194127IPR017877Myb-like domain
SuperFamilySSF466891.73E-2396179IPR009057Homeodomain-like
SMARTSM007170.02698134IPR001005SANT/Myb domain
PfamPF002492.0E-799127IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.5E-10106126IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.604.5E-5127143IPR009057Homeodomain-like
PROSITE profilePS5129425.695133187IPR017930Myb domain
SMARTSM007171.3E-14137185IPR001005SANT/Myb domain
PfamPF002494.9E-15138181IPR001005SANT/Myb domain
CDDcd001672.16E-11140183No hitNo description
Gene3DG3DSA:1.10.10.603.0E-19144187IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 447 aa     Download sequence    Send to blast
MPAVKVEEEE EERNPVASSP SVSEGSAHAA ALASPTAADS IFGRRRKSGP VRRAKGGWTP  60
EEDEKLRKAV DIYNGKNWKK IEVQCLHRWQ KVLDPELIKG PWTQEEDDVI INMVKKHGPK  120
KWSVIARWHN HLDPQIRKEA WTVEEERVLA RAHCMYGNKW AEIAKLLPGR TDNSIKNHWN  180
SSLRKKIDDY NTRDILPVHP PVVGDGLKQL PKRPPADNHF DLNKEPIICS RDRLGVVHSD  240
PTSHQRASNL KDFKGCADYL SLGQPVTSCE ASAADDSAFD LATQGMRMDS VHDKGTGNNF  300
VCGKVQGINF LGDKGLKINQ ISDKMGCSRQ AKREGEAAIN GGGSSLQSEA HSVGSLCYQI  360
PKMEDIAPAQ SPVFTANYVP EHSRNVMHSP NGYTTPPTHG KGSDQLSVES ILRSAAEKFH  420
ETASDVLKWE RRPDASKFNV VTLPKGK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C2e-53541875159MYB PROTO-ONCOGENE PROTEIN
1h89_C2e-53541875159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in abiotic stress responses (PubMed:17293435, PubMed:19279197). May play a regulatory role in tolerance to salt, cold, and drought stresses (PubMed:17293435). Transcriptional activator that binds specifically to a mitosis-specific activator cis-element 5'-(T/C)C(T/C)AACGG(T/C)(T/C)A-3', found in promoters of cyclin genes such as CYCB1-1 and KNOLLE (AC Q84R43). Positively regulates a subset of G2/M phase-specific genes, including CYCB1-1, CYCB2-1, CYCB2-2, and CDC20.1 in response to cold treatment (PubMed:19279197). {ECO:0000269|PubMed:17293435, ECO:0000269|PubMed:19279197}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold, drought and salt stresses. {ECO:0000269|PubMed:17293435}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1067560.0AK106756.1 Oryza sativa Japonica Group cDNA clone:002-115-D07, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637435.10.0transcription factor MYB3R-2-like
SwissprotQ0JHU71e-131MB3R2_ORYSJ; Transcription factor MYB3R-2
TrEMBLA0A0E0A0990.0A0A0E0A099_9ORYZ; Uncharacterized protein
STRINGOGLUM05G20280.10.0(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02320.25e-76myb domain protein 3r-5
Publications ? help Back to Top
  1. Kakar KU, et al.
    A consortium of rhizobacterial strains and biochemical growth elicitors improve cold and drought stress tolerance in rice (Oryza sativa L.).
    Plant Biol (Stuttg), 2016. 18(3): p. 471-83
    [PMID:26681628]