PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM05G23980.2
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 697aa    MW: 75240.4 Da    PI: 6.7162
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM05G23980.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.41.1e-22131244199
                      EEEE-..-HHHHTT-EE--HHH.HTT..................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh..................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 
                      f+k+lt sd++++g +++p++ ae++                  + +   s++l+  d++g +W++++iyr++++r++lt+GW++Fv+ ++L +
  OGLUM05G23980.2 131 FCKTLTASDTSTHGGFSVPRRAAEDCfpplvihlkeklvtfndyKTVR-PSQELIAVDLHGTQWKFRHIYRGQPRRHLLTTGWSSFVNRKKLVS 223
                      99******************************8888888887653332.5579***************************************** PP

                      T-EEEEEE-SSSEE..EEEEE-S CS
               B3  77 gDfvvFkldgrsefelvvkvfrk 99 
                      gD v+F   + ++++l+++v+r+
  OGLUM05G23980.2 224 GDAVLFL--RGDDGQLRLGVRRA 244
                      *******..34888899999986 PP
2Auxin_resp1064.2e-35269349182
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsL 82 
                      +a+++++ksvF++++nPr+++seF+v++++++k+l++++s+GmRf++ +e+ed++er+ +G+++g+s++dp+rWp+S+W++L
  OGLUM05G23980.2 269 VASSLENKSVFHICFNPRSGASEFIVPYWRLLKSLNHPFSIGMRFRVCYESEDANERS-AGLISGISEVDPIRWPGSRWKCL 349
                      578899***************************************************9.9*********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.79E-39120281IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.7E-36126246IPR015300DNA-binding pseudobarrel domain
CDDcd100174.99E-21129243No hitNo description
PROSITE profilePS5086311.871131245IPR003340B3 DNA binding domain
SMARTSM010192.2E-21131245IPR003340B3 DNA binding domain
PfamPF023621.1E-20131244IPR003340B3 DNA binding domain
PfamPF065072.0E-27270349IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    Send to blast
MGIDLNTVEE EAEEGAAAAV CGELWHACAG PGVALPRRGS ALVYLPQAHL AAGGGEVPPA  60
GAVAVPPHVA CRVVGVELRA DAATDEVYAR LALVAEGEML QQNFREGGGE DGAGEMEGCD  120
AEKKPRMPHM FCKTLTASDT STHGGFSVPR RAAEDCFPPL VIHLKEKLVT FNDYKTVRPS  180
QELIAVDLHG TQWKFRHIYR GQPRRHLLTT GWSSFVNRKK LVSGDAVLFL RGDDGQLRLG  240
VRRAVQLRNE ALFEPVNSSD SKLRILSSVA SSLENKSVFH ICFNPRSGAS EFIVPYWRLL  300
KSLNHPFSIG MRFRVCYESE DANERSAGLI SGISEVDPIR WPGSRWKCLL VRWDDSTDSS  360
HQNRVSPWEI ERVGGSVSVT HSLSSGSKRT KLHFPQGSLD TPFLNGNGHP DSMGTENFHR  420
VLQGQEFRGS RSHGVVCSES PGVPNFQSPD NRRFSADMRG YMMPASGPPQ RNTEFTYQPI  480
GFSESLGFPE VLQGQEMSQV DPLFRGATFG ARTQNDRVVS ANSVHRSAAQ SGLLASTLGH  540
PISQFTLSSS KVSSPSSVLM FNQATAPNHE TVGGTNNKGM HVSQFASQEM LSETVTWPGT  600
QLQTPSEITS NQFALARIPA APSGAESGSP KRDAGRSSCR LFGFSLTGNM LGEDGEGLED  660
GAIEAGCENP PVLELFGHSH STPGALHALC AAAPLGM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldy_A3e-911937118353Auxin response factor 1
4ldy_B3e-911937118353Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by auxin under light condition. {ECO:0000269|PubMed:17408882}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0679270.0AK067927.1 Oryza sativa Japonica Group cDNA clone:J013127F13, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015637659.10.0auxin response factor 14
SwissprotQ0DGS10.0ARFN_ORYSJ; Auxin response factor 14
TrEMBLA0A0E0A1L00.0A0A0E0A1L0_9ORYZ; Auxin response factor
STRINGOGLUM05G23980.20.0(Oryza glumipatula)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33860.11e-138ARF family protein
Publications ? help Back to Top
  1. Cheng CH, et al.
    A fine physical map of the rice chromosome 5.
    Mol. Genet. Genomics, 2005. 274(4): p. 337-45
    [PMID:16261349]