PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM05G28390.1

Organism

Oryza glumaepatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HB-other

Protein Properties

Length: 556aa MW: 64173.3 Da PI: 8.855

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM05G28390.1	genome	OGE	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	22.1	2.6e-07	495	521	28	54
HHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 28 eereeLAkklgLterqVkvWFqNrRak 54 ++++eLA++l+L +qV WF NrR + OGLUM05G28390.1 495 KQKKELADRLNLRISQVDAWFRNRRLR 521 789**********************87 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.200.20	5.7E-26	83	196	No hit	No description
SuperFamily	SSF56112	1.75E-84	100	388	IPR011009	Protein kinase-like domain
CDD	cd07859	0	104	429	No hit	No description
PROSITE profile	PS50011	40.697	105	384	IPR000719	Protein kinase domain
SMART	SM00220	3.2E-75	105	384	IPR000719	Protein kinase domain
Pfam	PF00069	1.5E-60	105	384	IPR000719	Protein kinase domain
PROSITE pattern	PS00107	0	111	135	IPR017441	Protein kinase, ATP binding site
Gene3D	G3DSA:1.10.510.10	8.7E-56	197	399	No hit	No description
SuperFamily	SSF46689	2.57E-6	488	525	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	6.0E-7	494	522	IPR009057	Homeodomain-like
PROSITE profile	PS50071	9.977	495	525	IPR001356	Homeobox domain
Pfam	PF00046	7.7E-5	495	521	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006468	Biological Process	protein phosphorylation
GO:0003677	Molecular Function	DNA binding
GO:0004672	Molecular Function	protein kinase activity
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 556 aa Download sequence Send to blast
MGGRARSILR WLRHHRSRRV SSSSFHLTTT GDDTVKDLHD PRREDAEGDG WEEVHEGPES 60 DPEEYIALVS EDAGTHLPVR TEPRRMDPSK KEPDFFTEYG EANRYKVSEV IGKGSYGVVA 120 AAVDTQTGER VAIKKINDVF DHVSDATRIL REIKLLRLLR HPDIVEIKHI MLPPSRREFR 180 DIYVIKANDD LTPEHHQFFL YQLLRGMKYI HAASVFHRDL KPKNILANAD CKLKVCDFGL 240 ARVSFNDTPS AIFWTDYVAT RWYRAPELCG SFFSKYTPAI DIWSVGCIFA ELLTGKPLFP 300 GKNVVHQLDL MTDLLGTPSA ESLAKIRNEK ARRYLSNMRK KPRVPFTKKF PGVDPMALHL 360 LERLLAFDPK DRPSAEEALT DPYFNGLANS EREPIAQPIS KLEFEFEKRK LAKDDVRELI 420 YREILEYHPH MLQEYLRGGD QMSFMYPSGV DRFKRQFAHL EEGVSKGEKS SPQLRQNASL 480 PSHLRSRKLM EHFQKQKKEL ADRLNLRISQ VDAWFRNRRL RIVIERNLEL GGIAIDHCEI 540 ESGQMTKINS ARCDVL

Sequence ? help Back to Top

Protein Sequence Length: 556 aa Download sequence Send to blast

MGGRARSILR WLRHHRSRRV SSSSFHLTTT GDDTVKDLHD PRREDAEGDG WEEVHEGPES  60
DPEEYIALVS EDAGTHLPVR TEPRRMDPSK KEPDFFTEYG EANRYKVSEV IGKGSYGVVA  120
AAVDTQTGER VAIKKINDVF DHVSDATRIL REIKLLRLLR HPDIVEIKHI MLPPSRREFR  180
DIYVIKANDD LTPEHHQFFL YQLLRGMKYI HAASVFHRDL KPKNILANAD CKLKVCDFGL  240
ARVSFNDTPS AIFWTDYVAT RWYRAPELCG SFFSKYTPAI DIWSVGCIFA ELLTGKPLFP  300
GKNVVHQLDL MTDLLGTPSA ESLAKIRNEK ARRYLSNMRK KPRVPFTKKF PGVDPMALHL  360
LERLLAFDPK DRPSAEEALT DPYFNGLANS EREPIAQPIS KLEFEFEKRK LAKDDVRELI  420
YREILEYHPH MLQEYLRGGD QMSFMYPSGV DRFKRQFAHL EEGVSKGEKS SPQLRQNASL  480
PSHLRSRKLM EHFQKQKKEL ADRLNLRISQ VDAWFRNRRL RIVIERNLEL GGIAIDHCEI  540
ESGQMTKINS ARCDVL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ci6_A	1e-104	111	433	44	370	Mitogen-activated protein kinase 6
5ci6_B	1e-104	111	433	44	370	Mitogen-activated protein kinase 6
6dtl_A	1e-104	111	433	38	364	Mitogen-activated protein kinase 6
6dtl_B	1e-104	111	433	38	364	Mitogen-activated protein kinase 6
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Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By ethylene and infection with rice blast fungus (M.grisea). {ECO:0000269\|PubMed:16673940}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	FJ907415	0.0	FJ907415.1 Oryza sativa Indica Group cultivar Pusa Basmati1 mitogen activated protein kinase 21-1 (MPK21-1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015637400.1	0.0	mitogen-activated protein kinase 17 isoform X2
Swissprot	Q6L5F7	0.0	MPK17_ORYSJ; Mitogen-activated protein kinase 17
TrEMBL	A0A0E0A358	0.0	A0A0E0A358_9ORYZ; Uncharacterized protein
STRING	OGLUM05G28390.2	0.0	(Oryza glumipatula)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12020.2	1e-14	WRKY family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Cheng CH, et al. A fine physical map of the rice chromosome 5. Mol. Genet. Genomics, 2005. 274(4): p. 337-45 [PMID:16261349] Reyna NS,Yang Y Molecular analysis of the rice MAP kinase gene family in relation to Magnaporthe grisea infection. Mol. Plant Microbe Interact., 2006. 19(5): p. 530-40 [PMID:16673940] Hu J, et al. The Bphi008a gene interacts with the ethylene pathway and transcriptionally regulates MAPK genes in the response of rice to brown planthopper feeding. Plant Physiol., 2011. 156(2): p. 856-72 [PMID:21487048]