PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G00270.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 504aa    MW: 53701.1 Da    PI: 5.7393
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G00270.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS202.42.6e-621254751371
             GRAS   1 lvelLlecAeavssgdlelaqalLarlsel....aspdgd...pmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsev 87 
                      lv+ Ll++A+ +++gd + a+++Larl+++     sp g    p+ R+aa +  AL    a          p+s+t + ++  +laa+k++ ++
  OGLUM06G00270.1 125 LVDDLLDAARLLDAGDSTSAREILARLNHRlpslPSPPGHahpPLLRAAALLRDALLPPTAL---------PVSST-PLDVPLKLAAHKALADA 208
                      5789*************************976666676655668899999999998665554.........44333.4669999********** PP

             GRAS  88 sPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLa...sRp..egppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176
                      sP+++f+ +t  qa l+a+ +++r+H +Dfd++ G++Wp+L+q+La     +  ++pp+l++T+++sp s++  el+ t+e L++fA+elg+pf
  OGLUM06G00270.1 209 SPTVQFTTFTSTQAFLDALGSARRLHLLDFDVGFGAHWPPLMQELAhhwR-RaaGPPPNLKVTALVSPGSSHPLELHLTNESLTRFAAELGIPF 301
                      **********************************************5533.3578889************************************ PP

             GRAS 177 efnvlvakrledlel.eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
                      ef++lv + l++ ++   L+  p+Ea+aV+l      +         + ++ L++vk+l+P vvv+v++ +++++       l+ l+ ++al++
  OGLUM06G00270.1 302 EFTALVFDPLSSASPpLGLSAAPDEAVAVHLTAGSGAFS--------PAPAHLRVVKELRPAVVVCVDHGCERGA-------LNLLRSCAALLE 380
                      ********999986515799999**********998887........56789********************966.......5667899***** PP

             GRAS 270 sleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWk 363
                      sl+a  ++  +  +kvE+++l+++++ +    g++           +++l +aGF ++++s+ a++qa++llr+++s+g++ve+++++l l W+
  OGLUM06G00270.1 381 SLDAA-GASPDVVSKVEQFVLRPRVERLAVGGGDK------LPPPLQSMLASAGFAALQVSNAAEAQAECLLRRTASHGFHVEKRQAALALWWQ 467
                      **988.5666999*************998888887......678889*********************************************** PP

             GRAS 364 drpLvsvS 371
                      + +Lvs+S
  OGLUM06G00270.1 468 RSELVSIS 475
                      ******99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098536.76299458IPR005202Transcription factor GRAS
PfamPF035149.1E-60125475IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MSSSSCHPHN PTTLPLPEPD SSKSPEPTSV LYNRSPSTSL GSCSSKPPED PPPPPIAADD  60
FCEDWDAVVD MHMLAPAPAP DSSFLRWIMD AGYADADTFP DHPSFDSDLL QLPMPMPSDH  120
PPQPLVDDLL DAARLLDAGD STSAREILAR LNHRLPSLPS PPGHAHPPLL RAAALLRDAL  180
LPPTALPVSS TPLDVPLKLA AHKALADASP TVQFTTFTST QAFLDALGSA RRLHLLDFDV  240
GFGAHWPPLM QELAHHWRRA AGPPPNLKVT ALVSPGSSHP LELHLTNESL TRFAAELGIP  300
FEFTALVFDP LSSASPPLGL SAAPDEAVAV HLTAGSGAFS PAPAHLRVVK ELRPAVVVCV  360
DHGCERGALN LLRSCAALLE SLDAAGASPD VVSKVEQFVL RPRVERLAVG GGDKLPPPLQ  420
SMLASAGFAA LQVSNAAEAQ AECLLRRTAS HGFHVEKRQA ALALWWQRSE LVSISLAAQE  480
RYFAAFKQSR IMEAGSLSVS DKLW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A5e-2320247580372GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0011290.0AP001129.1 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0644B06.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025881861.10.0scarecrow-like protein 6
TrEMBLA0A0E0A3W80.0A0A0E0A3W8_9ORYZ; Uncharacterized protein
STRINGOGLUM06G00270.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP145372224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.15e-59GRAS family protein