PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G00320.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 88aa    MW: 9981.28 Da    PI: 7.6836
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G00320.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.67e-094074137
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtl 37
                     r +WT  E++++++a +++  + Wk+I +++g  +t 
  OGLUM06G00320.1 40 RESWTDPEHDKFLEALQLFDRD-WKKIEAYVG-SKTV 74
                     789*****************77.*********.8885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.12E-102876IPR009057Homeodomain-like
TIGRFAMsTIGR015575.1E-103875IPR006447Myb domain, plants
PROSITE profilePS512939.7173888IPR017884SANT domain
Gene3DG3DSA:1.10.10.601.1E-43976IPR009057Homeodomain-like
SMARTSM007179.9E-43988IPR001005SANT/Myb domain
PfamPF002499.5E-74074IPR001005SANT/Myb domain
CDDcd001671.03E-44286No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MSSAPQQLLD SSSPGPGPGP EVEDDGGRRV RKPYTITKSR ESWTDPEHDK FLEALQLFDR  60
DWKKIEAYVG SKTVIQPLKL SYHNKLLI
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1116721e-124AK111672.1 Oryza sativa Japonica Group cDNA clone:J013156D15, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642931.11e-48protein REVEILLE 6
SwissprotQ8H0W38e-27RVE6_ARATH; Protein REVEILLE 6
TrEMBLA0A0E0A3X66e-58A0A0E0A3X6_9ORYZ; Uncharacterized protein
TrEMBLA0A0E0HJP06e-58A0A0E0HJP0_ORYNI; Uncharacterized protein
TrEMBLA0A0E0PSF86e-58A0A0E0PSF8_ORYRU; Uncharacterized protein
STRINGOGLUM06G00320.19e-59(Oryza glumipatula)
STRINGORUFI06G00370.19e-59(Oryza rufipogon)
STRINGONIVA06G00390.19e-59(Oryza nivara)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1733589
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52660.24e-29MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]