PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G00580.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 390aa    MW: 41809.1 Da    PI: 5.636
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G00580.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.21.6e-171562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd+llv+++ + G g+W++ ++  g++R++k+c++rw +yl
  OGLUM06G00580.1 15 KGPWTPEEDKLLVEYIGKNGHGSWRRLPKLAGLNRCGKSCRLRWTNYL 62
                     79********************************************97 PP
2Myb_DNA-binding48.22.6e-1568113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg ++ +E+ l++++++ lG++ W++Ia ++  gRt++++k++w+++l
  OGLUM06G00580.1  68 RGGFSDDEERLIIHLHATLGNK-WSSIATKLK-GRTDNEIKNYWNTHL 113
                      7889******************.********9.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-23765IPR009057Homeodomain-like
PROSITE profilePS5129419.151062IPR017930Myb domain
SuperFamilySSF466892.86E-2912109IPR009057Homeodomain-like
SMARTSM007172.1E-141464IPR001005SANT/Myb domain
PfamPF002492.1E-161562IPR001005SANT/Myb domain
CDDcd001673.63E-111762No hitNo description
PROSITE profilePS5129425.78563117IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.6E-2566117IPR009057Homeodomain-like
SMARTSM007171.1E-1467115IPR001005SANT/Myb domain
PfamPF002493.6E-1468113IPR001005SANT/Myb domain
CDDcd001672.13E-1171113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 390 aa     Download sequence    Send to blast
MGRSPCCEQD ADVKKGPWTP EEDKLLVEYI GKNGHGSWRR LPKLAGLNRC GKSCRLRWTN  60
YLRPDIKRGG FSDDEERLII HLHATLGNKW SSIATKLKGR TDNEIKNYWN THLRKKLLSQ  120
GIDPVTHRPR TDLLAGLPNL LAAANLGGAA HQLPLDLNAI KLQADAAKFQ ILQGLLRVLA  180
STTAPPPTAA VLPGTELMTS ILGATLAANS AGILGQQQQQ QQQLASVDLS RLGQYNGNYD  240
NLPPLTNDSC TQQTQPAMSS MSPDSLLNRI SSGISGDMLS SPELGQGGPS ASNMTTSPMA  300
APPPMVAADD HQCNTNTPSG GGGGGDGMSC EQTPASSTFD GLNLDDIDIN DMEGCWAMTD  360
MLLAEQCPSW LISSNNASEM YISKNNTSEM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-29121174108B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641987.10.0transcription factor MYB53
TrEMBLA0A0E0A4110.0A0A0E0A411_9ORYZ; Uncharacterized protein
STRINGOGLUM06G00580.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55293158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34670.12e-74myb domain protein 93