PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G02990.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 302aa    MW: 32606.1 Da    PI: 4.4178
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G02990.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP240.85.3e-1395138955
              AP2   9 dkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      ++ +grW+A+I   +   g +k+ +lg++ t eeAa+a++ a+ +++g
  OGLUM06G02990.1  95 HHHNGRWEARIGRvF---G-NKYLYLGTYSTQEEAARAYDIAAIEYRG 138
                      6779******99966...3.6*************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF030803.6E-829101IPR004314Domain of unknown function DUF239
PROSITE profilePS5103215.3375146IPR001471AP2/ERF domain
PfamPF008479.9E-994138IPR001471AP2/ERF domain
SMARTSM003801.8E-2095152IPR001471AP2/ERF domain
SuperFamilySSF541713.73E-1595148IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.108.3E-1596147IPR001471AP2/ERF domain
CDDcd000181.63E-2296148No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MNYIMVGYTL DKDYRLYPSS DPPKTLANHI VVGLVNDSGA QTNCFNLDCD GFHLQNSSFA  60
LGSSWSDSLS QHGGERYGVT LSIHRVSQIN LVLLHHHNGR WEARIGRVFG NKYLYLGTYS  120
TQEEAARAYD IAAIEYRGIN AVTNFDLSTY IRWLKPPSSS SAAGTPHHHG GGMVVGADRV  180
LAPAQSYPIS AAADDDVAGC WRPLPSPSSS TTTALSLLLR SSMFQELVAR QPVVEGDDGQ  240
LAVVSGDDAD ADADVKEPPP ESEYGEVFAS DDAAAAAAYG CSMYELDDSF ALIDDSVWNC  300
LI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0034870.0AP003487.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:OSJNBa0007O20.
GenBankAP0037670.0AP003767.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0036F10.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641668.11e-138AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A0E0A4X70.0A0A0E0A4X7_9ORYZ; Uncharacterized protein
STRINGOGLUM06G02990.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP41623473
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54320.26e-27ERF family protein