PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G04110.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 349aa    MW: 37380.4 Da    PI: 4.5226
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G04110.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.1e-18122172256
              AP2   2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkklege 56 
                      +++GVr ++ +g++ AeIr+      +++r++lg+f+taeeAa+ +++a+++l+g+
  OGLUM06G04110.1 122 KFRGVRKRP-WGKYGAEIRV----SqQSARVWLGTFDTAEEAARVYDHAALRLRGP 172
                      89*******.**********....3245**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.9E-29121180IPR001471AP2/ERF domain
PROSITE profilePS5103222.168122179IPR001471AP2/ERF domain
CDDcd000182.94E-29122180No hitNo description
SuperFamilySSF541713.73E-20122180IPR016177DNA-binding domain
PfamPF008473.8E-11122171IPR001471AP2/ERF domain
SMARTSM003805.1E-35122185IPR001471AP2/ERF domain
PRINTSPR003672.1E-10123134IPR001471AP2/ERF domain
PRINTSPR003672.1E-10145161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MIEAVVEKKA RRIVRGRWHV EASNEAAAAA PAVVAAPAPR VVRILYRDHD ATDSSGDDDG  60
EDDAPRRARL LVHEIHVARQ PVAMSPAAAA SSSQRRRVGP MKRRTEAAVD ATAAAEVAPE  120
RKFRGVRKRP WGKYGAEIRV SQQSARVWLG TFDTAEEAAR VYDHAALRLR GPSATTNFPV  180
TPTAPAPSPP PSRDTNAGAA SGYDESSDES QLVGSPVSVL RPMPARATAK KEAKEEDDSA  240
PDILGISAGD GLIFPFTGDV MNFPPPDEDM FGGGISFGEP TPPPMVFDDD CMARLGHVPN  300
DDVDDEHPVT SSYFLDDDLG DLPSWTEVDG FFSDVGGDDL FAAEPFPAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A7e-201221791472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642210.21e-154ethylene-responsive transcription factor 11
TrEMBLA0A0E0A5E60.0A0A0E0A5E6_9ORYZ; Uncharacterized protein
STRINGOGLUM06G04110.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131332332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G27950.13e-25cytokinin response factor 4