PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G05450.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 225aa    MW: 24169.9 Da    PI: 8.7591
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G05450.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.61.5e-1854103255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 
                      +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + g
  OGLUM06G05450.1  54 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARIMCG 103
                      69******9.**********8.....334**********************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.83E-3053113No hitNo description
SuperFamilySSF541711.57E-2054113IPR016177DNA-binding domain
PfamPF008474.2E-1154102IPR001471AP2/ERF domain
SMARTSM003801.4E-3854117IPR001471AP2/ERF domain
PROSITE profilePS5103220.69254111IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.0E-3354112IPR001471AP2/ERF domain
PRINTSPR003674.0E-115566IPR001471AP2/ERF domain
PRINTSPR003674.0E-117793IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 225 aa     Download sequence    Send to blast
MARLTTLITS TSLPPQPRAH SSLSRRERAL SLAATTRNPS PSSRSSAMAR PQQRYRGVRQ  60
RHWGSWVSEI RHPLLKTRIW LGTFETAEDA ARAYDEAARI MCGPRVRTNF PHDVADEAAP  120
PPPPHSAAAA SSSFLSAALV AKLHRFNLAS VQAAQRGNSN DDDSTTSSSA AASSRAVIPS  180
LPAAAGALGN AAATAEWSGG FLEEQYVDQM IEELLDSNFS MEISC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-1653114466ATERF1
3gcc_A6e-1653114466ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1083550.0AK108355.1 Oryza sativa Japonica Group cDNA clone:002-142-C04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015641438.21e-161ethylene-responsive transcription factor ERF003
SwissprotQ94AW51e-51ERF03_ARATH; Ethylene-responsive transcription factor ERF003
TrEMBLA0A0E0A5W21e-160A0A0E0A5W2_9ORYZ; Uncharacterized protein
STRINGOGLUM06G05450.11e-161(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141835118
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.12e-24ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]