PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G06550.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ERF
Protein Properties Length: 209aa    MW: 23044.6 Da    PI: 4.7673
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G06550.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.9e-171564255
              AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     ++kGVr +  +g+WvAeIr p++   rkr++lg+++++e+Aa+a +aa  +l+g
  OGLUM06G06550.1 15 RHKGVRLRQ-WGKWVAEIRLPNS---RKRIWLGSYDSPEKAARAFDAAFICLRG 64
                     68****998.**********933...5*********************999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103221.5881574IPR001471AP2/ERF domain
CDDcd000183.92E-261576No hitNo description
PfamPF008472.7E-101564IPR001471AP2/ERF domain
SMARTSM003802.0E-301580IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-251576IPR001471AP2/ERF domain
SuperFamilySSF541711.31E-181675IPR016177DNA-binding domain
PRINTSPR003678.7E-81627IPR001471AP2/ERF domain
PRINTSPR003678.7E-83854IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MQANTTQPAP EKERRHKGVR LRQWGKWVAE IRLPNSRKRI WLGSYDSPEK AARAFDAAFI  60
CLRGGEAIAG LNFPESPPAV VARTTDPREV LAFATSHANQ LLLLDAAIAQ EEEAHSFKKE  120
EEAQVEEKTA EESSDVVRAN AAPPPPVQVA GGSFDWSQLP LYSPTTTPAA EHWEEDNVEG  180
DIPVCSEMSV ETSSNSRYIG VVFQMHSYG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0060560.0AP006056.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, BAC clone:B1172G12.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0E0A6A91e-153A0A0E0A6A9_9ORYZ; Uncharacterized protein
STRINGOGLUM06G06550.11e-153(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP86132144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74930.14e-32ERF family protein