PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G07430.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 69aa    MW: 7332.43 Da    PI: 9.1276
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G07430.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH15.82.6e-054302354
                     HHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
              HLH 23 LrellPk.askapskKlsKaeiLekAveYIksL 54
                     L++l+P  a      +l+ a++Le+A++Y+k L
  OGLUM06G07430.1  4 LQRLVPGgA------RLDTASMLEEAIRYVKFL 30
                     777777744......9***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.101.2E-8144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.211130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-9250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.89E-5335No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 69 aa     Download sequence    Send to blast
MRALQRLVPG GARLDTASML EEAIRYVKFL KGHVQSLERA AAALHMHGGH AAAAGFAGDA  60
VYSCPSYYA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0126141e-108CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025882279.13e-28transcription factor HEC2
TrEMBLI1Q0J25e-42I1Q0J2_ORYGL; Uncharacterized protein
STRINGORGLA06G0065500.19e-43(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP161101111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50330.15e-14bHLH family protein