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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
OGLUM06G08570.1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family |
bHLH |
| Protein Properties |
Length: 72aa MW: 8106.03 Da PI: 7.7168 |
| Description |
bHLH family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| OGLUM06G08570.1 | genome | OGE | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | HLH | 12.4 | 0.0003 | 15 | 31 | 15 | 31 |
HHHHHHHHHHCTSCCC. CS
HLH 15 riNsafeeLrellPkas 31
+iN+ +++L++llP++
OGLUM06G08570.1 15 EINELISKLQSLLPNSR 31
7*************952 PP
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| Functional Description ? help
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| Source |
Description |
| UniProt | Atypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of grain size. Binds the transcription repressor APG and forms a heterodimer of antagonistic basic helix-loop-helix transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea (By similarity). {ECO:0000250}. |
| UniProt | Atypical and probable non DNA-binding bHLH transcription factor that acts as a positive regulator of grain size. Binds the transcription repressor APG and forms a heterodimer of antagonistic basic helix-loop-helix transcription factors that regulates grain length and weight by controlling cell elongation in lemma and palea. {ECO:0000269|PubMed:23136524}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AK071601 | 4e-54 | AK071601.1 Oryza sativa Japonica Group cDNA clone:J023102C01, full insert sequence. |
| GenBank | AP003513 | 4e-54 | AP003513.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0690H04. |
| GenBank | AP003569 | 4e-54 | AP003569.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0425F05. |
| GenBank | AP014962 | 4e-54 | AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence. |
| GenBank | CP012614 | 4e-54 | CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence. |
| GenBank | CT832284 | 4e-54 | CT832284.1 Oryza sativa (indica cultivar-group) cDNA clone:OSIGCEA029F08, full insert sequence. |
