PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM06G10780.1
Organism
Oryza glumaepatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB
Protein Properties Length: 489aa    MW: 55153.3 Da    PI: 11.7662
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM06G10780.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding45.31.9e-14123168348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +WT+eEd  l ++  + G+++W+++a+ m+ +R++ qc++rw+++l
  OGLUM06G10780.1 123 AWTPEEDAALERLAVENGSRHWRRVAAQMPRKRSPAQCRDRWRDHL 168
                      7*****************************99***********986 PP
2Myb_DNA-binding22.13.6e-07176220345
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 
                      ++T+ +d+ l ++v + Ggg   +Wk I+r +  gR+  ++k rw 
  OGLUM06G10780.1 176 PFTAADDDELTRLVLRPGGGggdRWKDISRAVH-GRSSRSVKRRWM 220
                      79*******************************.***********7 PP
3Myb_DNA-binding46.77.2e-15372420348
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                      +WT+eEd  l ++  ++G+++W+++a+ m+    +R++ qc++rw+++l
  OGLUM06G10780.1 372 AWTPEEDAVLERLAMEHGSRHWRRVAAQMPrhrRRRSPAQCRDRWRDHL 420
                      7*********************************************986 PP
4Myb_DNA-binding231.9e-07428473348
                      SS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 
                      ++T+++d  l++++ +l gg +Wk I+r +  gR+   +k rw+ ++
  OGLUM06G10780.1 428 PFTADDDAELARLCLRLDGGdRWKDISRAVY-GRSSRAVKQRWRELR 473
                      89***************9999*********9.***********9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.463122IPR017930Myb domain
SuperFamilySSF466891.8E-15471IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.9E-4430IPR009057Homeodomain-like
SMARTSM007170.0172374IPR001005SANT/Myb domain
PROSITE profilePS500907.1432672IPR017877Myb-like domain
CDDcd001675.89E-42671No hitNo description
Gene3DG3DSA:1.10.10.602.1E-63170IPR009057Homeodomain-like
PROSITE profilePS5129419.23116172IPR017930Myb domain
SMARTSM007176.8E-12120170IPR001005SANT/Myb domain
SuperFamilySSF466894.59E-19122219IPR009057Homeodomain-like
CDDcd001671.71E-10123168No hitNo description
PfamPF002499.7E-14123168IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.8E-16123179IPR009057Homeodomain-like
SMARTSM007175.0E-4173225IPR001005SANT/Myb domain
PROSITE profilePS500907.015176223IPR017877Myb-like domain
CDDcd001674.32E-4176222No hitNo description
Gene3DG3DSA:1.10.10.603.0E-6180221IPR009057Homeodomain-like
PROSITE profilePS5129417.376365424IPR017930Myb domain
SMARTSM007174.8E-12369422IPR001005SANT/Myb domain
SuperFamilySSF466895.14E-20371469IPR009057Homeodomain-like
PfamPF002494.2E-14372420IPR001005SANT/Myb domain
CDDcd001678.85E-11372420No hitNo description
Gene3DG3DSA:1.10.10.602.1E-17372431IPR009057Homeodomain-like
SMARTSM007170.0011425475IPR001005SANT/Myb domain
CDDcd001678.76E-5428472No hitNo description
PROSITE profilePS500906.957428473IPR017877Myb-like domain
PfamPF139216.0E-6429474No hitNo description
Gene3DG3DSA:1.10.10.601.7E-6432474IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 489 aa     Download sequence    Send to blast
MPRKRSPVQC RDRWRDHLAR DVFHRPYTAA DDDELTRLVL RPGGGGDRWK DISRAVHGRS  60
SRSVKRRWME IGTSDELLRK LAPPPSSSSN AVADDQCASA VTPSSAPPSG RCCVVLRIRL  120
PPAWTPEEDA ALERLAVENG SRHWRRVAAQ MPRKRSPAQC RDRWRDHLAR DVFHRPFTAA  180
DDDELTRLVL RPGGGGGDRW KDISRAVHGR SSRSVKRRWM EIGTSDELLR KLWHPRSSML  240
SPATVVDALP VGTLRLLWGR SRFTIPDVGP LAKPKPKVEV LLLAPHASMH IVVGASLFPR  300
PPQHAAQLAL GLCVILATPP PLTVVGVAYL GFIRVGARQL SSSSSAASVF ASSSATSPPL  360
GRCVVRIRLP PAWTPEEDAV LERLAMEHGS RHWRRVAAQM PRHRRRRSPA QCRDRWRDHL  420
ARDVFHRPFT ADDDAELARL CLRLDGGDRW KDISRAVYGR SSRAVKQRWR ELRKSDAFLG  480
KLWRRPLSH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3osf_A1e-1312446914106MYB21
3osf_D1e-1312446914106MYB21
3osg_A1e-1312446914106MYB21
3osg_D1e-1312446914106MYB21
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0055270.0AP005527.3 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0603C10.
GenBankAP0149620.0AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126140.0CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015642266.12e-81transcription factor MYB44
TrEMBLA0A0E0A7U70.0A0A0E0A7U7_9ORYZ; Uncharacterized protein
STRINGOGLUM06G10780.10.0(Oryza glumipatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP83601346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G67300.12e-17myb domain protein r1